Mlon012236.1
Basic Information
- Insect
- Mystacides longicornis
- Gene Symbol
- -
- Assembly
- GCA_963576905.1
- Location
- OY756425.1:478307-487354[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.42 43 6.1 0.4 1 23 321 344 321 344 0.91 2 19 3.9 4e+02 3.0 1.2 1 20 435 454 435 456 0.90 3 19 0.087 8.8 8.2 4.7 1 23 509 532 509 532 0.95 4 19 7.7 7.8e+02 2.1 0.1 2 23 542 565 541 565 0.85 5 19 0.00057 0.058 15.1 0.8 1 23 571 595 571 595 0.98 6 19 0.077 7.8 8.4 1.0 1 23 601 623 601 623 0.96 7 19 0.011 1.1 11.1 6.3 1 23 629 651 629 651 0.98 8 19 1 1e+02 4.9 0.1 3 21 663 681 661 682 0.88 9 19 0.0027 0.27 13.0 1.5 1 23 793 815 793 815 0.97 10 19 0.66 67 5.5 6.6 1 23 822 844 822 844 0.96 11 19 0.014 1.4 10.8 2.8 1 23 872 895 872 895 0.96 12 19 0.44 45 6.0 0.1 1 23 902 925 902 925 0.97 13 19 0.00035 0.036 15.8 0.1 1 23 947 970 947 970 0.97 14 19 0.045 4.6 9.1 0.6 1 23 982 1005 982 1005 0.96 15 19 1.4e-05 0.0014 20.2 0.6 1 23 1013 1036 1013 1036 0.97 16 19 0.00071 0.072 14.8 2.5 1 23 1042 1064 1042 1064 0.99 17 19 0.0019 0.19 13.5 3.9 1 23 1070 1092 1070 1092 0.96 18 19 5.7e-05 0.0058 18.3 2.1 1 23 1098 1120 1098 1120 0.99 19 19 0.00013 0.013 17.2 0.9 2 23 1128 1150 1127 1150 0.96
Sequence Information
- Coding Sequence
- ATGTCAGTCATTTTGTTCCTGGAATCAGACAATGGAGAAGAGGTACCAATACATGTTCAACCTGACGATGATTTCCAGGCATTTTTATCTAGAGCCagggGATTTCTTGGAAAAGATTTGGACCTCTCTACGATAGTTGGTGAACAGAATGTATCACTGTCTGATAATATCTATCAGTTCATGCTTCGAGCTGCTCTAAACAATGATTCTGGAAATTCTCTTTCTATGGAACATGAAATCATTGATGTAACCCATAATGAATCTTCCGAAGATCCTTTGCATGATCAATATCTTGTAGCTGATACAGACCATGAAAATGATAACCATGTAGTTTATGAGGTGTATACAAATGGTGATATTGTATCCGATGATACCTCTTCTGATGCCAAAAACACACGCTGTGCAGCCATCAATAGcgagaaaagaaaagaaaaaacagaaaGCAGCAATGATAACCATACAGAAAATGTTAGGACACAATGTCAGGCCAAGTGTTGTTTTTGTGATATTGCCATCAACAATCAAACATTTCCGTCTTACATATTTGACGAGAGAGATCAGAAGGAAATGAGAAAGAATAAACATCGACGGAACAGAGGAGCGGCCAAAGTGGTTTGTGATGTGTGCCTCCAAAGAGATTTCCTTAAGGTGGAAGAAATGCCCAGTACATTTGACAAAGATTCCTTCTTAATCTTGAGAAACAACAcccaatatttttataggcGCAAACAAATTCTTGATGAAGCGTGCCACAAAGGTCTTACTATATTGAATAAGCAATTTGAGGATGAAGATGAAGTCACCATGAGCTGTGAGAATTCATATCAAGTTGTCAGAATTGAGCAAACCCAGAACCTTGCTTCATATACATGCAGACTTTGTCATGCCATGCTGGACTGGGACACGTCACCTGAATCTCACTGCTTGGATCACATCACAACTAGAGCTGGGGGTCTAGTGTTTCCGTGTATTCTTTGTGAATATgGCTTCAGTGAATTTGGAGAACTAAAGTCACACATTCACAAAGTGCACATAAAACCTGTCAGCATTGATGATGTAGAGAGCAATCCAAATGATGCCATACAAAACACCAAGAGGAAACGATCTGAGAAAGGGCTGAGGTTGCTGCAAGAATTACTGACAAAGAGAAATGGTGATGGCCAAGAATTGGATTCCACACTGATGAATGATTCTGAGTCTGATAATGAATCTGGAGTGTGGATTATACAGGCTGGTGATGTCAGTCAGGAGCAAGAGTGTGAGGATGAACTTGGTGTCATGAGTAGCGGAGATGTGGTCACCTATCAGTGTGAATCTTGTAGTCAAGAATTTGAGTCCATGAAGGCGTTTTCACTTCATGAATGTTCGCTAAATATTTGCGAGGTGACGTCTGCTGTGATCCAGGATGACAAGCCAAAGGAAGACCCCAAAGAAGTGAAAGCCAAAGTGATAGCAGTGAAGGTGGAGGAAGGGGGAGGCCGGGGGCCAGTGAGAGACAGTCCGGAGAGCCCAGGGCGGGGGCACCATCAGTGCCCCTCCTGCGACAAAACATTCCATACCAAGATCCGTCTTCAGTTTCACATCCGTTATATCCACAGCGCTGGGTCAGACCCAGCAACCCTGCGCTGTTCCATTTGTCCCGAGATGGTGTTTGGCAGTGAAGGGGCTCTCTATGATCACATACATTTCACGCATCCCAAGAACAAGAAGTTTGTCTGCCCCGTGGAGGGTTGCAACCGCCAGTTCAACATCAAAGGCAATCTGAGAAACCATCTGTGTTCTCACAGTGGCAAAAGGGCGCACGCTTGCGATGTCTGTGACAAGTTGTTCTTGGATAAGCAGACTTTAAACGAGCATAAGATCACCCACCTTGCTATAAAACCATTCCAATGTCATATATGCCACAAGTATCTGAATCGTAAGTCCAGGCTGCGTATGCATCTTTTAAACCACCAAGCACAACCATCATGTAGCCAGATTCTGGCGTGCGGATGTTGTGGAGCAGCCTTTTCCGACTCCTCATCAGCTCAGAGTCATCTCAATGAGTTGGGTGAATGTGGAAGCATATTAGACACGGATGCCAGTAGTTACCAAAATTTTAACAATGAGCAATATGTCGATGATCCAGATGCAGTTTTTTCTCTCAACGATTCCGGAACCTCTCTGGATGCTAACGGCTGCCTAGATCAGGAAACCGTTAAGAAGGAAGAGTTGTATGTCTTGTTTGATGACATCAAAGAGGAAAAGTATGATGAAAAAAATGATGAAGACAACCAAAATGTAAATGGAGATGATGATCCTTCAGCAGATAAAGTCCTGTGTGATCTTTCCGAGGACGCCAAGAAGACGATACGTGTGGTGAAGCTGGACAAGGTGTTCAGATGCGAGTACTGTGAGATGGTATACTGCGTACAGGAGTCTCTTAACATACACAGACTGCAGCACAAAGATGAGACCAACCCTTATTCCTGTCACGTCTGTGGTGCCAGGTTCTCAACTTACTCCAGGTGCACTACACACAAGACCACGCATGGGTTTTATAGAAGCAGCAACAAGGGAGAACCTTCAGCCAAGTCGTGGGTCAGACGAGACGACTTCCCCGTCACTAAACTCTTCTCTTGCGAGGTTTGCAACAAGACGTATCTGCACTGGACTTACCTGCAGGTACACAGGAAGCTGAAACATTCGGACAATGTGCACATGTACAAGTGTGTCACCTGCGGAGACGAGTTTCCAAACAGTTGGGGTGTTGCTTATCACAGGAAGAAAGTCCACGGACAGAGCACTGGCTCTGCTCCTCCTGACGAGGTGCCCGACACTAATATTGAAAGGGTGCAATACTCCTGTCCAGACTGTGGCATAATCCTGGCCACTAAAGCACAGCTATTCCTGCATAAGAGATCCGTACATCCCGTCCAATGTTCTCCCTCAAAAGCAGACATGTTTGCCTGTGCAAAATGCGGAAAGAGATATTTAACAAAGGCTGGTCTTCAAGGCCATTTCAGGAAGCAGCACGAGAAGTCGGACAAGCAGAGCCACAAGTGTGAGGAGTGCGCCAAGGTCTTCATCACTCTCAGTGGCCTCAACACTCACATAAGGAGAGTCCATATGAAAGAAGTTAAATTCCAATGCGTGGAGTGTGGTTTGGGATTTTACAGTTCGTGCGATTATCGCAGCCATCTGAGGAGAcacagcggagaaaaaccatttCCTTGTCATCTTTGCGGAAAGCATTTCCGCACGAAAGGAATGAGAAATCAACATGTCACAATCCATAGTGGAGAGCGTCCCTTCAAATGTGAACAGTGTGGGGTTGGTTTCCGCCGCTCGTACGCTCTTCACAGTCACCGCCTCACTCACGCGCCCCACACACGTTCCCTGCAGTGCCCCATTTGCCCCAGATTGTTTCGGCTCAAGGCTGaattaaatacccacatgagGCATACACATTGTGTTGatcCTTTACTATACACCATTGAAACCCCATCAAAACAGACTAGTGATGATCACACTCCGCGTTCGTCATTATTGAAGCCTAATCAAGGACTCCAAGTGAAAGAAAGTAGTTCTTATCTCTTCTCAACCGTGTTTGAACCCAGACCTGACACTTTCATGGAGAACATCGGAGAAAGGCAAGTCTTTGATGAAAATGAAGAGTCACGAGAAGAGCAAATTAACTGTAGTAAGAATGATATTGAGGATGGCGAGCTGGAAGGTTTGCAAGATGACAACAATACCTCTGGcaatttatgtataatatcgGGACAGAGTTTGGAGAATGCGGAAATAGTCATAGACAATCAATACATGTTGGATGAGAACGATGAACCCAGCAAGGTTATGGAAGTGAATGGCTACTTCACGAAACTAGTCACGTTGAATAATGCAGAGGATGTGAGTGAAATAAAGTTCATCAAAGTGCAGAGTGACGCGGTCAGTAAACAAGAAGATCAGTTGCAATTGACCAGCGACCATTTGAATGAATTGTATGGATCAAATGTGGTCATTGATATGCCCATTGACGTCAACAAATGGATGTaa
- Protein Sequence
- MSVILFLESDNGEEVPIHVQPDDDFQAFLSRARGFLGKDLDLSTIVGEQNVSLSDNIYQFMLRAALNNDSGNSLSMEHEIIDVTHNESSEDPLHDQYLVADTDHENDNHVVYEVYTNGDIVSDDTSSDAKNTRCAAINSEKRKEKTESSNDNHTENVRTQCQAKCCFCDIAINNQTFPSYIFDERDQKEMRKNKHRRNRGAAKVVCDVCLQRDFLKVEEMPSTFDKDSFLILRNNTQYFYRRKQILDEACHKGLTILNKQFEDEDEVTMSCENSYQVVRIEQTQNLASYTCRLCHAMLDWDTSPESHCLDHITTRAGGLVFPCILCEYGFSEFGELKSHIHKVHIKPVSIDDVESNPNDAIQNTKRKRSEKGLRLLQELLTKRNGDGQELDSTLMNDSESDNESGVWIIQAGDVSQEQECEDELGVMSSGDVVTYQCESCSQEFESMKAFSLHECSLNICEVTSAVIQDDKPKEDPKEVKAKVIAVKVEEGGGRGPVRDSPESPGRGHHQCPSCDKTFHTKIRLQFHIRYIHSAGSDPATLRCSICPEMVFGSEGALYDHIHFTHPKNKKFVCPVEGCNRQFNIKGNLRNHLCSHSGKRAHACDVCDKLFLDKQTLNEHKITHLAIKPFQCHICHKYLNRKSRLRMHLLNHQAQPSCSQILACGCCGAAFSDSSSAQSHLNELGECGSILDTDASSYQNFNNEQYVDDPDAVFSLNDSGTSLDANGCLDQETVKKEELYVLFDDIKEEKYDEKNDEDNQNVNGDDDPSADKVLCDLSEDAKKTIRVVKLDKVFRCEYCEMVYCVQESLNIHRLQHKDETNPYSCHVCGARFSTYSRCTTHKTTHGFYRSSNKGEPSAKSWVRRDDFPVTKLFSCEVCNKTYLHWTYLQVHRKLKHSDNVHMYKCVTCGDEFPNSWGVAYHRKKVHGQSTGSAPPDEVPDTNIERVQYSCPDCGIILATKAQLFLHKRSVHPVQCSPSKADMFACAKCGKRYLTKAGLQGHFRKQHEKSDKQSHKCEECAKVFITLSGLNTHIRRVHMKEVKFQCVECGLGFYSSCDYRSHLRRHSGEKPFPCHLCGKHFRTKGMRNQHVTIHSGERPFKCEQCGVGFRRSYALHSHRLTHAPHTRSLQCPICPRLFRLKAELNTHMRHTHCVDPLLYTIETPSKQTSDDHTPRSSLLKPNQGLQVKESSSYLFSTVFEPRPDTFMENIGERQVFDENEESREEQINCSKNDIEDGELEGLQDDNNTSGNLCIISGQSLENAEIVIDNQYMLDENDEPSKVMEVNGYFTKLVTLNNAEDVSEIKFIKVQSDAVSKQEDQLQLTSDHLNELYGSNVVIDMPIDVNKWM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -