Mlon039933.1
Basic Information
- Insect
- Mystacides longicornis
- Gene Symbol
- -
- Assembly
- GCA_963576905.1
- Location
- OY756439.1:7010813-7013418[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.27 28 6.7 0.3 2 21 59 78 58 79 0.93 2 17 0.017 1.8 10.4 0.2 3 21 85 103 83 104 0.94 3 17 0.0017 0.17 13.6 1.9 1 23 108 131 108 131 0.90 4 17 0.27 27 6.7 0.3 1 20 159 178 159 180 0.87 5 17 0.082 8.3 8.3 0.3 1 23 250 273 250 273 0.94 6 17 0.13 13 7.7 6.0 1 23 315 338 315 338 0.92 7 17 1.1e-06 0.00011 23.7 0.8 2 23 378 400 377 400 0.95 8 17 0.83 84 5.2 4.5 1 19 406 424 406 428 0.91 9 17 0.0066 0.67 11.8 2.2 2 23 435 456 434 456 0.97 10 17 1.5e-06 0.00015 23.3 1.7 3 23 469 490 468 490 0.97 11 17 0.09 9.1 8.2 4.6 1 23 526 548 526 548 0.97 12 17 2.7e-05 0.0027 19.3 2.2 1 23 554 577 554 577 0.97 13 17 0.0002 0.02 16.6 0.9 1 23 620 643 620 643 0.98 14 17 0.00024 0.024 16.3 0.8 2 23 650 671 649 671 0.96 15 17 5.6e-06 0.00057 21.4 0.9 2 23 679 701 678 701 0.95 16 17 0.00033 0.033 15.9 1.1 1 23 707 729 707 729 0.99 17 17 0.031 3.1 9.7 4.8 1 23 735 757 735 757 0.97
Sequence Information
- Coding Sequence
- ATGAGGATATATCAAGAGAGTGGGACAAACTTGACCGACAAGGTGGCCACATCTACGCTCACTACGACATCACCACACAAACACACCGCAACGGAGGAGAGTGATGGGGTGAACGTATGTCTGCTCAGTGGCAACGAGATCAATGTTTTGGTCAACAATACCTTTAAACTCTTAACCTGCCATTTGTGCACCGAGAATTTCCTCAACTTAGAAGAACTAAGAGCGCACGtcaaatattgtatgaaaacaTTTTGCGAAAGATGTCAGATATCGTTCATGAACGAAGCCGAATTGGAGAAACATCAAAAGCAATGCAACATTCACCACTGCAACATGTGTCCTAAACGCTTCATAAGTGCCCCAACCCTGAGGTCGCATCAGGTGGCTAAACATTCTACCTTTAACTGCGACTTCTGCAATGTTAAATTCATCAACGACCTGGAATGTGAAAACCACAAAATGGAGAAGCACCATTTCTTGTGCGAGAGTTGTAACAAAACCTTTGAGAGCTCCTTGCAAGCTGTTAAACACAGACTTAACAATATACCTGACGACAAGCTGCTGTGCTCCTTCTGCTACGGGACTTTCCAGTATCTTCCCAAGATCAAAAAGGAAATCATAACAGACGCCATGGACTACAACTCGCAGATGACAATGTCTCCAGAAGACTCTTTCTTGATACCCGAAATAGAGAGTGTGACGGGAGCTGGAATGGATCAAAATACAAATGTGACCGTTACAGAGAAGTATGTGTGTATCACTTGTAGCGCTATGTTTGACACTGTCAAAGATTTGAACAATCACGTCAAAACGACTCATGGAGAACCTTTTTTGGATGAGTCTGCGAAGGGTGGCTACTCCGCTTTGGACAAGTACGAGAAGCAGATTGATGAGTTGTTTGATACTAAAATTCTGCAGAGCGAATTCGAGAAACAAACTATGTACAACTGTGTAATTTGCAGCAAAGTGTACAAATCATTTAGCACTTACTGCAGGCACGTGTATCACAACCACAAGATCAATCTATTGCTGGCTTCCTCCAAGAAGTTCCACTGCCACGAATGCAGAGTGGATAAGAATAGGTTGAGTGAGCTGAACAATCACCTCTACTTCCGACATGAGAACTCCATTCCCTGTGAGCACTGTGGGAAGACATTCACATCCAACAAGCTCTTGAAAGTTCACATTCTGAAGATCCATCCAACCAAACCAGCCTTTGACTGCTTGGACTGTACCAACAAGTTCCACTCTCAGGCCGATCTGAAGAAGCATTGCTTATGGCATTGGTACCAGGAGATAGTGCAGTGCCAGGTGTGCAAAAAGAAGGTGAGAGGGAAAAAGAAGATGAAAGAACACATGAGGTATCACGTTACCAAGTCTGCAGACGGATCCAGCACAGTTGCCTGTAAAGAATGCGGGAAAATGTTCTCCTCCAAAAACAGTTTGCACGCCCACATGAGGAATATCCACAGCGATGGCAAGAAAGAAACAATCTTGTGCGGAGACTGCGGAATGTTGGTCAGTTGTAATAAGTTCAAGAAACACTACGACCGCATGCACAGCAAAGGAAGAGTGTATCGGTGTTCCGTTTGCAGTAAATCATTCTTCTGCAAGGAATTGCTACGGCAACATTCGGATACTCACGTCATAGGCAGACCACACACGTGCACAATGTGTCCTGCCGCTTTTAAACAGCAAAGAAACTTGCGTATGCATATTCGTAATTTCCATTCTTCCTCCAACAACGTATGTAGGTTTTGTAACATTAAGTTTGAAACCATCGAAGAATGTGATGAGCACCGAACCGAATATCACAAAAACGCTACCAAGTTCATTAAATTAGAGAGTGGAGAGGGATTCCAATGTTCGCATTGCGAGAAAGTTGTGAAAAGCACACGAGCCATGGCTGCTCACATGAGAATGATGCACGAAGAACACATGGACCTTAAGTGTTCTCAGTGTGATCAGAAGTTTGCCTTCTTGAAGCAACTGCAGAACCACATGGGTGTGCATTCAGGTCCTAAGCCCGACTTGAGCTGTAATCACTGTGGAAGGATGTTCACAACACTTGGAAGTCTGAACAGTCATATCAAATGGGTGCACATTGGCGAACGCAACTTCCAATGCTCCTATTGTCCGTCTAGATTCAAACGTAAGGACGCTCAAATAGTCCACGAGAGGACACACACGGATGAACGGCCTTACACTTGTACAGTTTGCGAGAGGAAGTTCAGGCAACGCACGGACTGTAAACGTCACGAAGCTAAACATAACATGCCTGGATTCAAGTACAATAGGCCTCACAGAATGAAGCCTAAAGAAATCATTGACAGCAGACCTATGGCCAATGCCAATAAAATGCCCACTGGAGAGGTTGTCATTGAAGAGGTTGTGGAGGGAGTGGAAGAGGAACAGATGGACACGTCTGATACTTTGATGTTGCTGGAGGTTCCTACGCAGGAAGACAACCAGGCTGCGGCTTTCTTGAGTTACATAGTGCAGAACTAG
- Protein Sequence
- MRIYQESGTNLTDKVATSTLTTTSPHKHTATEESDGVNVCLLSGNEINVLVNNTFKLLTCHLCTENFLNLEELRAHVKYCMKTFCERCQISFMNEAELEKHQKQCNIHHCNMCPKRFISAPTLRSHQVAKHSTFNCDFCNVKFINDLECENHKMEKHHFLCESCNKTFESSLQAVKHRLNNIPDDKLLCSFCYGTFQYLPKIKKEIITDAMDYNSQMTMSPEDSFLIPEIESVTGAGMDQNTNVTVTEKYVCITCSAMFDTVKDLNNHVKTTHGEPFLDESAKGGYSALDKYEKQIDELFDTKILQSEFEKQTMYNCVICSKVYKSFSTYCRHVYHNHKINLLLASSKKFHCHECRVDKNRLSELNNHLYFRHENSIPCEHCGKTFTSNKLLKVHILKIHPTKPAFDCLDCTNKFHSQADLKKHCLWHWYQEIVQCQVCKKKVRGKKKMKEHMRYHVTKSADGSSTVACKECGKMFSSKNSLHAHMRNIHSDGKKETILCGDCGMLVSCNKFKKHYDRMHSKGRVYRCSVCSKSFFCKELLRQHSDTHVIGRPHTCTMCPAAFKQQRNLRMHIRNFHSSSNNVCRFCNIKFETIEECDEHRTEYHKNATKFIKLESGEGFQCSHCEKVVKSTRAMAAHMRMMHEEHMDLKCSQCDQKFAFLKQLQNHMGVHSGPKPDLSCNHCGRMFTTLGSLNSHIKWVHIGERNFQCSYCPSRFKRKDAQIVHERTHTDERPYTCTVCERKFRQRTDCKRHEAKHNMPGFKYNRPHRMKPKEIIDSRPMANANKMPTGEVVIEEVVEGVEEEQMDTSDTLMLLEVPTQEDNQAAAFLSYIVQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -