Mlon037628.1
Basic Information
- Insect
- Mystacides longicornis
- Gene Symbol
- -
- Assembly
- GCA_963576905.1
- Location
- OY756437.1:26223658-26225070[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0033 0.33 12.7 0.2 2 23 129 150 128 150 0.97 2 11 1.1e-05 0.0011 20.6 3.7 2 23 157 179 156 179 0.95 3 11 0.00034 0.035 15.8 0.2 1 23 189 211 189 211 0.98 4 11 0.0043 0.43 12.4 3.2 1 23 217 239 217 239 0.98 5 11 0.0017 0.17 13.6 2.9 1 19 245 263 245 267 0.90 6 11 0.00068 0.068 14.9 1.6 1 23 273 296 273 296 0.96 7 11 6.2e-05 0.0063 18.1 0.2 2 23 303 325 303 325 0.93 8 11 0.00037 0.038 15.7 1.9 2 23 331 349 331 349 0.97 9 11 8.1e-05 0.0082 17.8 3.7 1 23 355 377 355 378 0.96 10 11 0.0029 0.29 12.9 0.8 1 23 385 410 385 410 0.96 11 11 3e-05 0.0031 19.1 0.3 1 23 416 439 416 439 0.97
Sequence Information
- Coding Sequence
- ATGAACGGAGACGTGTCTTTGAAGTGCAGAGTTTGTCTGCGAGAATGTACCTCTTCTCTATCCGTATTTGACTTTGCCAGTAATGAGAGGTACAGCAATTTATTGAAGGAATATACTGGGACTGAAGTGAGTGATAGTGATCCTTCTAAACTGTGTAACAAGTGTGCGTCGGATTTGTTATTGCTAGTCAAATTTGTAAGACGATTTCATTCTACTACTAAAAAGATAACTAAAGGTAGGAAAGTCAAGACAAGAAAAACGGCTAGAAGAGATGAAACATTAGAGAGTACGAAGGGAACTGAAGTAAAGGAAGAAACAGAAGAATAcagtaatatttataaaaatgttgtatCTGAAGATCTGGGCCATAAGAAGAATATGTTACAATGCCTCATATGCGGGGTTATGGTGCAGAATAAATCTGCATTCTTAGTTCATTACAGGAAGCACAGTGGCGAGAAGCCATGCGTCTGCAAGCACTGCGGGAAGGGTTTTACACAGTCGGGCTCATTGAATGAGCACGTTAAAAGAACACACGAAGGAGGACGAGAAAAGGGGTACAGATACACGTGTGAGGCGTGCGGTAAACAATTCTGGAGGCGGGGCGCCCTCACTGTGCACACTCGCATCCATACTAAAGAGAAGCCATATCAGTGTTCTTTTTGTCCTAGAACTTTTGCACAATACTCCGAACACCTCCTTCATACCAGGACTCACACTGGTCAACGTCCCTACGCCTGCTCTTTATGCTCCAAAGCTTTCATTTCTCATTCAGCCCTCCGTCGACACTGTACAGTTCACGAAGTTGAACGAAATTTCGCCTGCCACATTTGTCAATCGAGATTGAAATCTAAAGAGTCTCTCAAAAAACACATTCTAGTCATGCACACGGCGGAAAAGAAGAATGTGTGCGACGTCTGCGGAGCCAAATTCAGTATGAAATACAATCTCAAATCTCACATTGAGTTGAGGCACTCGGACAAATCTGGAACTTGCACCATTTGCAATAAATCATTTTCCAACTTACAGAAACATTTGAATACTCACACCGCAGACACCCTGTATACATGTTCAATTTGCAGTAAGAAGTTTACGAAAGAAAAGGCCCTCCAGCAGCATACAGCCAAGCACCATGCAGGTGTCGCCTCCTCGTATCCGTGTACGTACAAAGACTGCCTTGAATCTTTCACTAAACAGTCCAAATTAGATCTTCATATATTGAAAACACACGTCCACCATACTCCGTATATGTGTGAAGTTTGCTCTAAAGGATTCTATCGGTTGGCAGATCTCAGGAAACATGCTAAATCAGCCCacgaacaaacaaaaaatgacGCTTCTTTGTTGTTAGAAAGTGGTATAAATGACTATGTTAATCTTGCAGTTTGTAATGGAAATCCTATCGGTAGTTAA
- Protein Sequence
- MNGDVSLKCRVCLRECTSSLSVFDFASNERYSNLLKEYTGTEVSDSDPSKLCNKCASDLLLLVKFVRRFHSTTKKITKGRKVKTRKTARRDETLESTKGTEVKEETEEYSNIYKNVVSEDLGHKKNMLQCLICGVMVQNKSAFLVHYRKHSGEKPCVCKHCGKGFTQSGSLNEHVKRTHEGGREKGYRYTCEACGKQFWRRGALTVHTRIHTKEKPYQCSFCPRTFAQYSEHLLHTRTHTGQRPYACSLCSKAFISHSALRRHCTVHEVERNFACHICQSRLKSKESLKKHILVMHTAEKKNVCDVCGAKFSMKYNLKSHIELRHSDKSGTCTICNKSFSNLQKHLNTHTADTLYTCSICSKKFTKEKALQQHTAKHHAGVASSYPCTYKDCLESFTKQSKLDLHILKTHVHHTPYMCEVCSKGFYRLADLRKHAKSAHEQTKNDASLLLESGINDYVNLAVCNGNPIGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -