Basic Information

Insect: Mystacides longicornis
Gene Symbol: -
Assembly: GCA_963576905.1
Location: OY756424.1:5404767-5406464[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0033 0.33 12.7 5.5 1 23 114 136 114 136 0.96

2 9 0.0088 0.89 11.4 4.9 1 23 142 164 142 164 0.98

3 9 3.1e-05 0.0032 19.1 6.7 1 23 170 192 170 192 0.98

4 9 0.00045 0.046 15.4 2.5 2 23 199 220 198 220 0.97

5 9 0.00035 0.035 15.8 1.2 3 23 228 248 226 248 0.97

6 9 1.3e-05 0.0013 20.3 1.2 1 23 254 277 254 277 0.98

7 9 4.1e-05 0.0042 18.7 0.9 1 23 283 305 283 305 0.97

8 9 1.4e-05 0.0014 20.2 3.8 1 23 312 334 312 334 0.96

9 9 2.8e-08 2.8e-06 28.7 2.4 1 23 340 362 340 362 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0033	0.33	12.7	5.5	1	23	114	136	114	136	0.96
2	9	0.0088	0.89	11.4	4.9	1	23	142	164	142	164	0.98
3	9	3.1e-05	0.0032	19.1	6.7	1	23	170	192	170	192	0.98
4	9	0.00045	0.046	15.4	2.5	2	23	199	220	198	220	0.97
5	9	0.00035	0.035	15.8	1.2	3	23	228	248	226	248	0.97
6	9	1.3e-05	0.0013	20.3	1.2	1	23	254	277	254	277	0.98
7	9	4.1e-05	0.0042	18.7	0.9	1	23	283	305	283	305	0.97
8	9	1.4e-05	0.0014	20.2	3.8	1	23	312	334	312	334	0.96
9	9	2.8e-08	2.8e-06	28.7	2.4	1	23	340	362	340	362	0.99

Sequence Information

Coding Sequence: ATGGGATCAGAGCAGAAGAACTCATCATTCACTGCCCATGGTCTTATTAAATTAGATTACTATAATGAAGACTCAAAACATTACATTCAATTCACACAGGGAAATTTCGAGAAAACAACTGAGGGAATCCAAATCTTTGTCCCTTATGACAGTGTGAAATATTTAGCATTCATAGAGTATGAAAAGtttgacattttgtttgaaataaataatagtggTGAAGTTACAAACAAAGTGAATGTAACAGACATTAAAAAAGAATCTATTGATAAAGCTGCTGATCCATTGAGTTATGTTGGCTCTTTACATGTGTCTATTCATGGAGACGGAGAGAAGAAGTTTGAATGTGAGGAATGTCACAAAAAGTTTCATTTGAAATCTGATTGGAATAAACATAGAACACTCCACGTTATGGAGAGGCCACACCAATGTGACAAATGTCATAGACGCTTTCTATCAGCTACCAAGTTACAGAGTCACCAACTAGTGCATACGGGAATCAGATTGTTTGAGTGCCATATTTGTCACAAAAAATTTTATCGATCTGCTAACCTTTTAACACATCTTCATATACATAATGAAGATAGAAAACTGCAATGCGATATTTGTGGACGAAAATTTGTTGGAAAGTATTGTTTTGAATATCATAAAATGACGCACACTAAAGAGAAACCGTTTGGCTGTGATATCTGCAAGAAAAATTTCACGACTAAATTACAAATGACTGAACATTATAGAGGACATACTGGTGAAAAACCTTATAAATGTGATATATGTTTTGAAAAGTTTGCCCAAAAACAAACGCTTCGTACACATGTCAGAGTAAATCATGGAGATGGTAAGCCACATGTCTGTTCTGTGTGTGGAAAATCTTTCCCAATATTAGGTAAACtcaacaaacacaaaaaaatccaCAATGAAAATAGTAAAAAGCATTTTTGCTCGCAGTGCGGTATGAGATTTATTACGAATGGTCACTTAAAGCGTCATTTAATGGTGCATACCGGTGAAACCCCGTACGAATGTTCCCAGTGTGGTAAAAAGTTCACACAGAAATCTAATATGAGGTCACACATGAAAGTTCACACTAAATTACCATTATGTGAAGacaaaagtaattaa
Protein Sequence: MGSEQKNSSFTAHGLIKLDYYNEDSKHYIQFTQGNFEKTTEGIQIFVPYDSVKYLAFIEYEKFDILFEINNSGEVTNKVNVTDIKKESIDKAADPLSYVGSLHVSIHGDGEKKFECEECHKKFHLKSDWNKHRTLHVMERPHQCDKCHRRFLSATKLQSHQLVHTGIRLFECHICHKKFYRSANLLTHLHIHNEDRKLQCDICGRKFVGKYCFEYHKMTHTKEKPFGCDICKKNFTTKLQMTEHYRGHTGEKPYKCDICFEKFAQKQTLRTHVRVNHGDGKPHVCSVCGKSFPILGKLNKHKKIHNENSKKHFCSQCGMRFITNGHLKRHLMVHTGETPYECSQCGKKFTQKSNMRSHMKVHTKLPLCEDKSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -