Mlon037047.1
Basic Information
- Insect
- Mystacides longicornis
- Gene Symbol
- PRDM5
- Assembly
- GCA_963576905.1
- Location
- OY756437.1:17065279-17066790[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.023 2.4 10.0 0.8 3 23 192 213 191 213 0.96 2 11 1.6e-05 0.0016 20.0 4.2 1 23 222 244 222 244 0.98 3 11 3.8e-05 0.0039 18.8 0.3 1 23 250 272 250 272 0.98 4 11 1.2e-05 0.0012 20.4 0.7 1 23 278 300 278 300 0.98 5 11 3e-05 0.003 19.1 3.8 2 23 307 328 306 328 0.95 6 11 2.1e-05 0.0021 19.6 0.4 1 23 334 356 334 356 0.97 7 11 6.6e-06 0.00067 21.2 2.2 1 23 361 384 361 384 0.97 8 11 2.4 2.4e+02 3.7 0.1 2 16 390 401 389 408 0.65 9 11 0.22 22 7.0 2.7 1 23 414 436 414 436 0.83 10 11 0.031 3.1 9.7 2.4 1 23 442 467 442 467 0.97 11 11 6.3e-06 0.00064 21.3 1.3 1 23 473 496 473 496 0.96
Sequence Information
- Coding Sequence
- ATGGAGTTCAATTCAAAATACACGTGTATCACCTGCTTAAAGAAAACTGAAAACGGAACTTCCATTTTCGAAATAAACAGCGACGATGAAGTTGAAATAAAGTTTTCAGATATGTTGGTCACttgtattaatattgatttaaatatatttgacttgaaATGTTACCCGAATAAGTTATGTACGTCTTGTGTTGTAACGTTGACAACCGCGTGGAAATTTATAGAAATGTGTAAGTCTTCTGAAAAAGTTCTGTCTGATTATTACAGCAATAGCGAAAATCTTACCGAAACTGTTTTGACAAATGCTATAGCGACCGAGCCTCCTTGTGATATAAAGgaagaaataaaagaagaagatttctCAGATGGGGCATCAGTGAAGTCTGAGGTTATGTATGGAAGCATAAAATTGGAGCCAgttgttaaaaagaaaaaaagaaatagaaaaagaaCTAGCAGTAGCAGTAGTGATGAGATTTTATCTACGAAGAGGAGTAGAAGTAAAAATACCAGCCAATCTAAGCCCGCCAAAAGAAAAGTTGATAAAGCAATGAACTCAAAAATCAAAGCCCACTGCCCAGTGTGCGATGATATATTTGACACTGAATTAAAGTTGAGGAAACATATGGTAACATTTCATCCCGATAGTGATGCTAAGATTGTTTATCATTGTAAGATTTGCAGAAAGAACTTCAAACGTAAAACAGATTTGGTAGTTCATCGAAGAATACACTCCGGAGAAAAACCGTTCCAATGTTCCATATGTTTCAAAGGATTTGCTCAATCAGGCACCCTAATAGAACATTCTAGAATCCACACCGGGGAAACTCCATTTGTTTGTCAAGTTTGTAAGAGAGTCTTTGCTTCAAGATCTTCATATTGGAGACACAGGTTAGTTCATTCTAAGGAAAAGTTATGTGCTTGTGAACTATGTGGGAAAACATTCAGTCATCGTGAGTCTTTAAGACAACATAAGCTGGTTCATACCGAAGAAAAACCATACACGTGTGACATATGCAACCGAAGTTTGAAATCTAAATATGCGCTGCAGCAACATCTAGTGATTCACGCTAGTAAAGAATTTGTATGTGAACATTGCGGGAAAAAGTTTTCAGTCAAAAACAGTGTTGAGAAACATATTAAAAGAATGCATTCCAAAGATTCCGGAGAATGTCCTTTGTGCTCGAAAGTTACGTCTAACCTTCCCGAACATATGCTCCTGCACAGTGGTAAAAAGCCGTACAAATGTAAAATTTGTAATCGAGAGTTTCAACTCAAGAATACGTTTTCTTTCCATTTAACAATGCATAAAAATGCCGAAAAATACAAATGTCACTTTGAAGGATGTAAAAAAGCATTTCCCAAAGAAAACATGCTCACCTTCCATATCAACAAAATGCATGTAAACGAAACTCCTCACGTTTGCGTCAAATGTTCTAAAGGATTTTATAGAAATAGCGATTTGTCGAGGCACATGAACATTGCGCATTTGGAAAACAATCGATTGGTATAA
- Protein Sequence
- MEFNSKYTCITCLKKTENGTSIFEINSDDEVEIKFSDMLVTCINIDLNIFDLKCYPNKLCTSCVVTLTTAWKFIEMCKSSEKVLSDYYSNSENLTETVLTNAIATEPPCDIKEEIKEEDFSDGASVKSEVMYGSIKLEPVVKKKKRNRKRTSSSSSDEILSTKRSRSKNTSQSKPAKRKVDKAMNSKIKAHCPVCDDIFDTELKLRKHMVTFHPDSDAKIVYHCKICRKNFKRKTDLVVHRRIHSGEKPFQCSICFKGFAQSGTLIEHSRIHTGETPFVCQVCKRVFASRSSYWRHRLVHSKEKLCACELCGKTFSHRESLRQHKLVHTEEKPYTCDICNRSLKSKYALQQHLVIHASKEFVCEHCGKKFSVKNSVEKHIKRMHSKDSGECPLCSKVTSNLPEHMLLHSGKKPYKCKICNREFQLKNTFSFHLTMHKNAEKYKCHFEGCKKAFPKENMLTFHINKMHVNETPHVCVKCSKGFYRNSDLSRHMNIAHLENNRLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -