Mlon036759.1
Basic Information
- Insect
- Mystacides longicornis
- Gene Symbol
- Sall1
- Assembly
- GCA_963576905.1
- Location
- OY756437.1:11698097-11700139[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.047 4.7 9.1 0.8 2 23 241 262 240 262 0.97 2 13 0.0076 0.76 11.6 0.3 1 23 268 291 268 291 0.97 3 13 0.13 13 7.7 1.9 2 23 331 352 330 352 0.97 4 13 2.1e-06 0.00021 22.8 1.5 1 23 358 381 358 381 0.98 5 13 0.0009 0.091 14.5 1.3 2 23 414 435 413 435 0.98 6 13 0.00014 0.015 17.0 0.6 1 23 441 464 441 464 0.96 7 13 6e-06 0.0006 21.3 4.4 2 23 484 505 483 505 0.94 8 13 2.6e-06 0.00026 22.5 3.3 1 23 511 533 511 534 0.95 9 13 8.2e-05 0.0083 17.8 1.3 1 23 540 562 540 562 0.98 10 13 4.3e-05 0.0044 18.6 1.1 1 23 568 591 568 591 0.97 11 13 0.00031 0.031 15.9 0.1 3 23 598 619 597 619 0.96 12 13 0.011 1.1 11.0 0.2 3 23 626 643 625 643 0.96 13 13 0.0012 0.12 14.1 2.8 3 23 651 671 649 672 0.95
Sequence Information
- Coding Sequence
- ATGTATTCAGATAATGAACAATCGTGTCGAATTTGTTTTTGTAATGAAGATAATCTAGTTCCATTGTTTGAAAGccacaaaaaatacaatgaacTTATTAAGGAATACACTGGTGTAGAAATTGTTCACAACGATCTACTGCCATCAGAAATTTGCAAAAGCTGTTTGTCGGAGCTAGAAACTGTCGTCAAGTTTGTTTCCAAAGTAAAATTGTCAGTAGACAAATTCAATAGCATCTTAGAACAAAAACTGTTAGATGAAATCAAAGAAGACGAGGAAGAAAAAATACCACTTAGTATTTTAGGAGCTTCCCTTAAAAAAGAAAAGGCTGAATCTTCTGACGATGGACTCCCTATCAATGATGATCTTTCAGACAAATGTGAAGATGAAGGGATTGAAACTTGTGATAAAATCAAACTAGAGCCTGATGTAATATCCTTAGATAATCTTAAAAGTTTACTTTCAAACAAAGGAGGTGATGATTTCTTATATGTGACTGTTAATAATCTGACAATCAAAAAGGAAGGTATGAAAAAAGAAACACCTGTGGCTACTGATGAACTTCCACCTAGCCCGATATCATTCTCAccgttaaaattattaaaacgaaaaaaagataaaacgaAGAAAAAACACAAGAAAGATAAACAGAAGACTGAGATAGATTCTAAATATAAAGTTTTGAAAGCCAGCGAGCATGGTCTCTTGAAGGACATGGTCAAATGTCTTATTTGTGGTCAAATAATGCACAATAGGTCAGCATTCATCGTGCACTACAGGAGGCACACGGGAGATAGGCCCTTCAACTGTAAACAGTGTTCCAAATCATTTCTTCTGTTAGGGGCACTTAATGAGCATATTAGGAGTGTACATTTAGGACTCAAACGAAGAAAACTCAAAGAAAAAGACCCCATTCCTCCAGACCCTgatgaaaatgtcaaatttcaaattctcAAGGCTGATGAGTATGGCCTTCGAAAGGACAAAGTACAGTGCTTAGAATGCAGGCTGATATGTGAGAATAGATCTGCTTTTATAACTCATTTTCGGAAACACAGCGGTGAAAAACCTTTTCAATGTGAACATTGTGAAAAAAGCTTCCCACGCTTAGGTTCATTAAAtgatcatataaaaaaaatgcacgaTCCCGACAATCCCAATGGTGGTGACGATGAAAGTAATGATCTGTTTACCATTATCAAAGCCAAAGACAATCCCACCATGAACAAAGATATGGTGCAATGCCAGATGTGTAAGCTGTTGTTCAACGACAAATCAGCCTTTAGGATTCATTACAGGAAACACACAGGAGACAACCCTTTCAAGTGTGACCAGTGCACCATGGTCTTCAGAAGAATGATGGACCTGAAAGATCATATAAAGGAGATCCATGAGAAGAGAGTCTCCCACTATACTCCCAGGAAAGGCTCGGGCGGAGAAGAGAGCTGCATCTGCTATGCTTGTGGCAAAAGTTTCAAACACAAATCATCTTTGACTATTCATATTCGAACTCACACTGATGAAAAACCTCACGAATGTACGTACTGCGGAAAACGGTTTATTCGTTCCCAAGAACTTTCTCTCCATATCCGTATCCATCACACTGGCGAGAAACCTTATTCTTGTCACCTTTGTGGGAAAACCTTCGCTGCTGGGACGCAGCTCAAAAGCCATATGTTTGTTCATACAGATGAAAAGAACTTCAATTGCCACATATGTGCAACTTCTGTGAAAACGAGGGATTCGTTGGCTAAACATATGAGGGTTATGCACAGCACGAGAAAGAACATTTGCGATATTTGCGGAGCAGCTTTTGCTTTTAGGTATGGTTTGAGAGACCATATGAAAAATAGACATTCGGACAGATCTGAAATTTGTGATGTTTGTAAAAAGCCTTTCTCAGATTTGGCCAGACACATGATCACGCACTCGGATCAAAAGCCATTTGGTTGTCAAATGTGTCAAAAAGGGTTCTTTAGACAAAAGAGTTTGAAAGCTCACTTGGTTAAACACCACAATGAACCAGCGTTACCTTATATGTAA
- Protein Sequence
- MYSDNEQSCRICFCNEDNLVPLFESHKKYNELIKEYTGVEIVHNDLLPSEICKSCLSELETVVKFVSKVKLSVDKFNSILEQKLLDEIKEDEEEKIPLSILGASLKKEKAESSDDGLPINDDLSDKCEDEGIETCDKIKLEPDVISLDNLKSLLSNKGGDDFLYVTVNNLTIKKEGMKKETPVATDELPPSPISFSPLKLLKRKKDKTKKKHKKDKQKTEIDSKYKVLKASEHGLLKDMVKCLICGQIMHNRSAFIVHYRRHTGDRPFNCKQCSKSFLLLGALNEHIRSVHLGLKRRKLKEKDPIPPDPDENVKFQILKADEYGLRKDKVQCLECRLICENRSAFITHFRKHSGEKPFQCEHCEKSFPRLGSLNDHIKKMHDPDNPNGGDDESNDLFTIIKAKDNPTMNKDMVQCQMCKLLFNDKSAFRIHYRKHTGDNPFKCDQCTMVFRRMMDLKDHIKEIHEKRVSHYTPRKGSGGEESCICYACGKSFKHKSSLTIHIRTHTDEKPHECTYCGKRFIRSQELSLHIRIHHTGEKPYSCHLCGKTFAAGTQLKSHMFVHTDEKNFNCHICATSVKTRDSLAKHMRVMHSTRKNICDICGAAFAFRYGLRDHMKNRHSDRSEICDVCKKPFSDLARHMITHSDQKPFGCQMCQKGFFRQKSLKAHLVKHHNEPALPYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00299343;
- 90% Identity
- -
- 80% Identity
- -