Mlon011335.1
Basic Information
- Insect
- Mystacides longicornis
- Gene Symbol
- -
- Assembly
- GCA_963576905.1
- Location
- OY756424.1:27329197-27341740[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.3 4.3e+02 2.9 0.2 2 23 268 290 267 290 0.95 2 12 0.0025 0.25 13.1 1.4 1 23 399 422 399 422 0.94 3 12 1.5e-06 0.00015 23.3 1.0 1 23 428 450 428 450 0.98 4 12 0.003 0.31 12.8 0.1 1 23 458 481 458 481 0.90 5 12 0.00052 0.053 15.2 3.9 1 23 487 509 487 509 0.96 6 12 6.2e-05 0.0063 18.1 1.1 1 22 515 536 515 537 0.91 7 12 4.3e-05 0.0044 18.6 1.3 1 23 543 565 543 565 0.98 8 12 2.3e-07 2.4e-05 25.8 0.6 1 23 571 593 571 593 0.99 9 12 0.00083 0.084 14.6 3.9 1 23 599 621 599 621 0.98 10 12 0.003 0.31 12.8 2.6 2 23 628 649 627 649 0.96 11 12 3.8e-06 0.00038 22.0 1.6 1 23 655 677 655 677 0.98 12 12 2e-06 0.0002 22.8 4.3 1 23 683 705 683 705 0.99
Sequence Information
- Coding Sequence
- ATGGAaaatatattagatatttattcATTGTGCCGTTTATGTgctgaagaaaataaaaacggaATATCAATATTTGAAAACGATGAAAGTGACTCAGAACTGTGTGCTACCATCAACAAATATTTGCCGCTCAAGattCAAAACGACAGTGAACTTCCAAAATCAATTTGTCCTGGATGCAACATTCAACTAGAATCAAATGTACAATTTTTAAACTTAATTGTAAAAGGACAGcTAATACTTCGACAAATCctgaaagaacaaaaaaatctcaataGTAAAGTAGAAGAACACATTTTAGTTCAAGAAGATGGCACCCTGTACGCTGCTGACCAAGCTATATCATTGGAGGTGGAAGGCCTCACGCATCCTCGGCGTAAAAGAGGCCGTCCCAAGAAAGTCAAAGCACCTACTCCACCTCCTGAAGAACAAATGTTTGAAGAGCAGATTGAACAACTGGTTGAAGAGACAGAGGTTGAAGTGCCTGTCGTCAACGATAGTGTGGAAGGGCGGAAGAGAAGAATAAAAACTCCTCAAAGATTCAAAGAAGCTGTTCAGgGCAAAGAGTTGGAAAGAATTTTCAAAGAAGAAGGAGTTATTGACGAGTTAAGTGATGATGAGTTGGAAAAGGTAGATATTCCAGACCCACTGTCCTCCATGCAGAAATTTAAGGAAGAGTGGGTGGAAGAAGTTATCGGTCATATGGAGACGGTGGAAGGGAATTCATTAGGTCAACTTGTGATTGTCAACAAAGCTAAGGGGAGAGGACGACCCAAAGgtAAAAGTAGATCAATTAGACAGACATGTAACCTTTGTATGTTGGAATTTGCTTCGTTGGGTCGATACATGTCCCACATAGCCACCTTCCATTCTAAAGATGACTTGATGCAGCTGAAAACTGAGAGTCAAGTCAAAATAGATAAATCAGAAGAATCACTGTCGTCCAGCTTCACCACCAACTTTTTCAGCAACGAGAGTGAGATACAAACTTCTGACGTGTCGAAAATACTCAATGGGATCAAACAAGATGTAACCAACAGTGAAGATGTCATATCTAGTGATATTCTCTTAATAAAACCAGATGGATCGTTGCAGATGTCTGAAAGTCTTCCTGAAAATATTCTGGCGAGCGAAGAATCAACGCAAGCCGAACCATACAACGATATAAAAGTAGAAAAACAACCGGATTCGAAATTCAAGTGCACAGAATGTGATAAAATCTTTGTATCTAAGCAGAGCTGTGAAGTTCATTTGAAGGCGGCCCACTTAAAGCAACGCCCTTTTAAATGTACAGTATGTGATAAATCGTTTCCTTACCAAGTGACTCTCAAGCAACACATGCTCCTGCACGCCTCTGACAATGTCAGAGGATATGCCTGCGATGAATGTGGTAAAGTTTTAAGTCATCCATCTTCGGTTATATACCACAAAGAAGCCGAACATAACAATGGGAGAAGATATGTTTGTATAAAGTGCAGAAAGTCCTTCAAGCACAAACAATTGTTGCAGAGACATCAACTGGTCCATTCTGATAACCGCCCCTATGTGTGTAAGGTGTGTAATGCCAGTTTCAAAACTAAAGCCAACCTTATTAATCATCATCCAACGCACACAGGAATCAAAAGGTTCACGTGCGACATATGTCAACAGCAGTTTGCCCACAAAGCTAGTCTCACATTACATCTTAGATGGCATGCAGGTGAAAAGCCATACGTATGCACAGTCTGTTCCAAAAGGTTTAGTCAAAACGGCAATCTTTCAGAACACATGCGCATCCACACTGGGGAGAAACCCTACCAATGCACCATGTGTGAGAAAGCTTTTACCACATCGTCCCAACACAAACTTCACTTGCAAAGGCATAAAGGAGAAAAACCTTGGCATTGTACCGAATGTGAGAAACGATTTCTCAATAAAGAGACTTGGAGAGTCCACATGCGTCGTCATAGAGGAGAAAGACCCTTTTCATGTGAACAATGTAACCGCAGTTTTACGGAGCGTTGGGCTTTGAGGAAGCATCAAAGAATGCACAGTGGGGAAAAACCATACAAATGTGAAGTGTGCAGCAGAACTTTTGCAGATTGTTCAAATCTTACCAAACACAGAAAgaCTCACTTCCCGGGAATCGAAAATCTGATCCTGCCCGAGTTTGGCATTGGTAAGTCTAGTACTGTGTTGCCGGATTTGAATGAAGAGGAACTTGATAGTGAAAATCAGCACATTGTGTATGTCACTTACCAAGCAGCTGATGATGAAGACGAGGAAGGGGAAACTCCAACCATTCATATCATCAATGAGAGCGATATTGTAGATGGCAGTAATGTGAGTGTGTTTGATCAAGATAATGACGCCACAGAAACATATATGATCAACAGTGAAACTATTAACAACGATGAATCAGCTAATATGCCCATGATATTTGATCAGGTGACAGATGTAGAAGGCAATCCGCTGCATTTTACGACCCAAGATGGAACCCAACTCGCCATCACATCTACGGATGGAGGCAAATCACTACAGgttACAACAGAAGACGGTCAACTCATTCCAGTTCAGCTGAGTGATAAATTGGATGATGATGAAAACaTTCTGAAGGATCCTCTAATTCTGAGTTctgaaattgttgatgaagagCCAACTACCTCGGAGAGTACCATCAGAGTGATGGGCCACGGAGGACAAACCCTGAAATTTTTAGCTGCTCTAGATAACAGTTATTCCTATTACACATATACATAA
- Protein Sequence
- MENILDIYSLCRLCAEENKNGISIFENDESDSELCATINKYLPLKIQNDSELPKSICPGCNIQLESNVQFLNLIVKGQLILRQILKEQKNLNSKVEEHILVQEDGTLYAADQAISLEVEGLTHPRRKRGRPKKVKAPTPPPEEQMFEEQIEQLVEETEVEVPVVNDSVEGRKRRIKTPQRFKEAVQGKELERIFKEEGVIDELSDDELEKVDIPDPLSSMQKFKEEWVEEVIGHMETVEGNSLGQLVIVNKAKGRGRPKGKSRSIRQTCNLCMLEFASLGRYMSHIATFHSKDDLMQLKTESQVKIDKSEESLSSSFTTNFFSNESEIQTSDVSKILNGIKQDVTNSEDVISSDILLIKPDGSLQMSESLPENILASEESTQAEPYNDIKVEKQPDSKFKCTECDKIFVSKQSCEVHLKAAHLKQRPFKCTVCDKSFPYQVTLKQHMLLHASDNVRGYACDECGKVLSHPSSVIYHKEAEHNNGRRYVCIKCRKSFKHKQLLQRHQLVHSDNRPYVCKVCNASFKTKANLINHHPTHTGIKRFTCDICQQQFAHKASLTLHLRWHAGEKPYVCTVCSKRFSQNGNLSEHMRIHTGEKPYQCTMCEKAFTTSSQHKLHLQRHKGEKPWHCTECEKRFLNKETWRVHMRRHRGERPFSCEQCNRSFTERWALRKHQRMHSGEKPYKCEVCSRTFADCSNLTKHRKTHFPGIENLILPEFGIGKSSTVLPDLNEEELDSENQHIVYVTYQAADDEDEEGETPTIHIINESDIVDGSNVSVFDQDNDATETYMINSETINNDESANMPMIFDQVTDVEGNPLHFTTQDGTQLAITSTDGGKSLQVTTEDGQLIPVQLSDKLDDDENILKDPLILSSEIVDEEPTTSESTIRVMGHGGQTLKFLAALDNSYSYYTYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -