Basic Information

Insect: Mystacides longicornis
Gene Symbol: -
Assembly: GCA_963576905.1
Location: OY756436.1:13903356-13909672[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.7e-06 0.00068 21.2 1.0 1 23 38 60 38 60 0.98

2 12 0.0078 0.79 11.5 0.4 1 19 83 101 83 105 0.90

3 12 0.0013 0.13 14.0 3.8 3 23 114 134 113 134 0.98

4 12 9.4e-05 0.0095 17.6 1.0 1 23 140 162 140 162 0.99

5 12 0.0031 0.32 12.8 12.0 1 23 171 193 171 193 0.97

6 12 2.6e-06 0.00026 22.5 0.1 2 23 200 221 199 221 0.96

7 12 4.3e-07 4.4e-05 24.9 3.9 1 23 227 249 227 249 0.99

8 12 1.9e-07 1.9e-05 26.1 0.1 1 23 255 277 255 277 0.99

9 12 1.2e-07 1.2e-05 26.7 1.3 1 23 283 305 283 305 0.98

10 12 0.00025 0.026 16.2 2.8 1 23 311 332 311 332 0.98

11 12 6.3e-05 0.0064 18.1 1.4 1 23 338 360 338 360 0.98

12 12 2.8e-06 0.00028 22.4 1.3 1 23 366 389 366 389 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.7e-06	0.00068	21.2	1.0	1	23	38	60	38	60	0.98
2	12	0.0078	0.79	11.5	0.4	1	19	83	101	83	105	0.90
3	12	0.0013	0.13	14.0	3.8	3	23	114	134	113	134	0.98
4	12	9.4e-05	0.0095	17.6	1.0	1	23	140	162	140	162	0.99
5	12	0.0031	0.32	12.8	12.0	1	23	171	193	171	193	0.97
6	12	2.6e-06	0.00026	22.5	0.1	2	23	200	221	199	221	0.96
7	12	4.3e-07	4.4e-05	24.9	3.9	1	23	227	249	227	249	0.99
8	12	1.9e-07	1.9e-05	26.1	0.1	1	23	255	277	255	277	0.99
9	12	1.2e-07	1.2e-05	26.7	1.3	1	23	283	305	283	305	0.98
10	12	0.00025	0.026	16.2	2.8	1	23	311	332	311	332	0.98
11	12	6.3e-05	0.0064	18.1	1.4	1	23	338	360	338	360	0.98
12	12	2.8e-06	0.00028	22.4	1.3	1	23	366	389	366	389	0.97

Sequence Information

Coding Sequence: atgTTAGATGAAATCGATGCAACTTGGTGTAGAGAGTTAATACTAAATGGATTTCTTACAGGTCAAACTAAACTGTCTCGTCATGAAAAGACCCATCTTTCTATCAAACCATTCATATGTAAAGTCTGCAGCAAGGGTTTTAATGAGTCATCAGATTTAAGGCGGCACGAGAAGACCCATAAGCGGAAAGAGGAAGAAAATGAGAAGCAATTAGCTGAAGATGGGAAGAAAGATTTAGAAGTTAGATACCCTTGTTCGCAGTGTAACTTGTCATTTAGTTCCGAGGGAGATCTTGATATACATTGCGCGGTTCATGTTGAATCAAGCGGCAAGAAGATTTGTCGCCATTGTAAAAAGCAGTTTGATACAATTCTTCAGTTAAAAAGACACGTTAGAACACATTTATCTGATAAGCCGTATAAGTGTCGTATTTGCCAAAAAGGATTCCCAGAAATGGGTTCGCTTACGCGCCATTTCCGCAGCCATACAGGGGAAGCCagagaaaaaaaacaccatTGTAAGCATTGTGATAAAGCgTATCATGATcgtcattctctcaacatacaCATGAGGAAACACACTGGGGAGCGACCGTGGATTTGTTCTGAGTGTGGGAAAGGATTCATCGATTCTCGTTTACTCAATTCTCATATGAAGATTCACAGTGACAGCAAGCCATTTAGGTGTAAAGTGTGTGATAAAAGATTCAAACACGAATCCACGCTCACCACTCATATAAGGATACACACTGGTGAAAAGCCATATGTTTGTTCCGTTTGTGGAAATGCTTTTGTACAGTCATCCAATCTAGCATTGCATATGAGAACGCATACTCAGGAACGTCCTTACTCATGTGACTACTGTCCCAAAAAGTTTTCAAGTTCATCAGCATTAACTACACACAGACGCATTCAtactggagaaaaaccatattCGTGTAATATTTGTCAAAAAAAattTGCAAGGCATGATTTGTCTGCTCACATGCGCagacatacaggtgaaaaacctcACAAGTGTTCTGTTTGTCCTAAAAAGTTTGCCACTGTTGGACAGATGAACCAGCATACAAGAATTCACACTGGGGAAAAACCGTTTGTTTGCCCGATTTGTCGCAAAGGTTGTGCGACTTCCAGCTATTTGAAAAAGCACATGCTGAGGGCCCACAACACTACAGGAATATGGCAAATCCCCaaagaagaagtaaaagaagaatCTTCTGAGAATTCGTTTGAGGAAAAATTCAAGAGAGTGGCGATACTACGAAGGAAAGTTGCAATTCCTAAAAATAGTGTCAAATCTAATAAAGCAATTTTGCCTAGTAAAACGGAAATAATTCCTGTATCtcataaaattgaaaaacaGAGTCAAGGGCCGAGTGCGTTATCTTCGACGTTCCCTAGCAGTATGGTCAATGTTGTTGCTTTGACTGCTAGTGGTGAAGTCAGTATCCTAAGTCAGAAGAGTGGCTTAAATATATCCACTCTGAGAGCTCAACCTACCGATAGCATAAGTACGGTGGTATCCAATTCGGGAGAAAAACTTTTCCAAATTGATCCCTCATTTTTAAGAATACATCATATTTCATCTGAACATATAACTATTGCAGAAATTGCTCCCGAATCTCAGACacagtaa
Protein Sequence: MLDEIDATWCRELILNGFLTGQTKLSRHEKTHLSIKPFICKVCSKGFNESSDLRRHEKTHKRKEEENEKQLAEDGKKDLEVRYPCSQCNLSFSSEGDLDIHCAVHVESSGKKICRHCKKQFDTILQLKRHVRTHLSDKPYKCRICQKGFPEMGSLTRHFRSHTGEAREKKHHCKHCDKAYHDRHSLNIHMRKHTGERPWICSECGKGFIDSRLLNSHMKIHSDSKPFRCKVCDKRFKHESTLTTHIRIHTGEKPYVCSVCGNAFVQSSNLALHMRTHTQERPYSCDYCPKKFSSSSALTTHRRIHTGEKPYSCNICQKKFARHDLSAHMRRHTGEKPHKCSVCPKKFATVGQMNQHTRIHTGEKPFVCPICRKGCATSSYLKKHMLRAHNTTGIWQIPKEEVKEESSENSFEEKFKRVAILRRKVAIPKNSVKSNKAILPSKTEIIPVSHKIEKQSQGPSALSSTFPSSMVNVVALTASGEVSILSQKSGLNISTLRAQPTDSISTVVSNSGEKLFQIDPSFLRIHHISSEHITIAEIAPESQTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -