Basic Information

Insect: Mystacides longicornis
Gene Symbol: -
Assembly: GCA_963576905.1
Location: OY756430.1:27102126-27115271[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.029 3 9.7 0.7 1 23 213 236 213 236 0.97

2 14 0.0018 0.18 13.6 1.4 1 21 243 263 243 265 0.95

3 14 0.00021 0.021 16.5 3.3 1 23 271 294 271 294 0.98

4 14 6.8e-06 0.00069 21.2 2.2 1 23 301 323 301 323 0.98

5 14 7.4e-05 0.0075 17.9 5.0 1 23 328 351 328 351 0.96

6 14 6.3e-05 0.0063 18.1 3.6 2 23 360 380 359 380 0.97

7 14 1.4e-05 0.0014 20.2 7.2 1 23 388 410 388 410 0.98

8 14 1.8e-06 0.00018 23.0 0.5 1 23 416 438 416 438 0.98

9 14 3.4e-06 0.00034 22.1 3.7 1 23 444 466 444 466 0.99

10 14 0.00059 0.06 15.1 0.8 1 23 472 494 472 494 0.97

11 14 1.5e-05 0.0016 20.1 6.7 1 23 500 522 500 522 0.98

12 14 1.9e-07 1.9e-05 26.1 0.6 1 23 528 550 528 550 0.99

13 14 0.045 4.5 9.1 0.1 1 17 556 572 556 573 0.91

14 14 0.0065 0.66 11.8 2.7 1 23 635 659 635 659 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.029	3	9.7	0.7	1	23	213	236	213	236	0.97
2	14	0.0018	0.18	13.6	1.4	1	21	243	263	243	265	0.95
3	14	0.00021	0.021	16.5	3.3	1	23	271	294	271	294	0.98
4	14	6.8e-06	0.00069	21.2	2.2	1	23	301	323	301	323	0.98
5	14	7.4e-05	0.0075	17.9	5.0	1	23	328	351	328	351	0.96
6	14	6.3e-05	0.0063	18.1	3.6	2	23	360	380	359	380	0.97
7	14	1.4e-05	0.0014	20.2	7.2	1	23	388	410	388	410	0.98
8	14	1.8e-06	0.00018	23.0	0.5	1	23	416	438	416	438	0.98
9	14	3.4e-06	0.00034	22.1	3.7	1	23	444	466	444	466	0.99
10	14	0.00059	0.06	15.1	0.8	1	23	472	494	472	494	0.97
11	14	1.5e-05	0.0016	20.1	6.7	1	23	500	522	500	522	0.98
12	14	1.9e-07	1.9e-05	26.1	0.6	1	23	528	550	528	550	0.99
13	14	0.045	4.5	9.1	0.1	1	17	556	572	556	573	0.91
14	14	0.0065	0.66	11.8	2.7	1	23	635	659	635	659	0.91

Sequence Information

Coding Sequence: atggaaacaGAAAATCATTCAGAAGAAGAGTGCTCGGGAAGCGAAGGTAATATTGATGGAGAAGAGGAATCTATTCGCATCAAAGAGGAAGTTGATGATGAAGAAATAGACGAGGATGTAAGTATAGAAGAACCAGAGATGGAAGAGGTAGAACCGGAAAAGAAGAAAACTGGAAATAGAAGAAATCAAATGTTCAAATCAAGAACTCCGGCAAAGATAGAGACTACCCAAAACTCAGATGAAGAGTTATCTAATAATGAATCTTATGATGAATATAGTTCGAGTGAAACTGAAGGTGAAATTGAGATACCTATTGAAGTGGATATGGGAGATGATAACAGAAATCCTGAAGTTACCCTGGAAAATCAGGAGCAGGAAAATAAATATCCGGATATTATCCCAGCAGATGGTCAACCTATACCAGTTGTCACCATTAAACAGGAATATGACGAAGATGAGGAGATGCTGTTTAAGGAAGATGAGGAAATGCTGGAGGAAGGAGAGGAGCAGAGTGGTGAAGATAAGAAAGATGCGTCAGTGGATAAGAAAGAAGGGATTATTCGTAGAAGGAGGAGAAAAGGTCCTAAACCCGAAGCCACGGATGAGGACTTGAGAAAAATCAACATCCGCCTGTCCTTCATATGTCAGCTGTGCAATGAGAAGTGCGCCGACACTCTCTCCCTGGGAGTGCACATGAAGACACTCCACAGCGAGCAGATTGGCACCTACATGTGCTCCACTTGTCAGCGAGTCTATCAAACTGCAGAAAGTTTAAGGGCTCATATGCTGTGCCACGTACAGCTAGGAAGCTATGAGTGTACAGACTGCAAGAAGATCTACCACCATCCAGCTAGTTTAATGTCGCACAGAAGAAGATGGCACAAGAAAGAGGGACAGCCTCACGAGTGCAAGCAATGTGGCAAGACTTACAGCATCCTCAGCGACCTCAACACCCACATGAAGTCACACACACCACAAAGTTTTCCATGCAAACATTGCGACAAGGCTTTCCGTACTGAGAGATACCTCCGACTGCACACAAGACACATACATTTGGGTCACAAACAACTAAAACTGGAGTGCAAAGTTTGCCATAAAAGTTTTCAAAAAAAAAGTTTGGCCACCCACATGAAGACCCATCAAGCTGGAAGTGTGCCATTACACAAGTGCCATTACTGCGGCAAGTGCGTCACTACGCAGTACAGTCTGATGGCGCACGTCAGGAGACACGAAGGTGTAAAACCTTTTGTTTGTCACATCTGTGAGAAAGGATTCGTTGACAAGGGCAAACTGGCCAGACACATCAACTCTCATTCGGGCTCCAGAGACTTCCAATGCGATGTTTGCAAGAAAACATTCTCCGAGAAACAGTACTTGCGCCAGCACAGGAGAACACACGACGAAGCTAAAGACCACCCGTGCAGGATGTGTGGTGCAATATTCAAGAGTTTGAATTCCGTGTGGTCGCACATGAGGAAACACACCCAGTCTGACAGATACAAATGTCATCTTTGCGGCAAAACATGTTACAGACCTGACCATCTGCGCTCCCACATGGTGAGTCACACTGGGGTCAAGGAGTACCAGTGCGAGATCTGCAGCAAGAGATTTGCAAAGCCTTACGACCTCACGGAGCACATGCGGAGTCACAGTGGAGAGAAGCCCTTCCCGTGCACTCTCTGCGACAGAGCATTTGCCAGACACGGCGAATTCAGAGcgagtattttatttcaaagagtCCCAAAGGCTTTTTGTGCTCTGCTAACTGCAAAAGTTTTCCACTCTTTGGTTCTGGTCGACaaacaCAAGATGAGCAAATATCATCGTGAACGTGAAATTGAGGCCGGGCTGCCGCCTTCTTTTCCCGTTTTGCCCCCACGTCCACCCAAGTCAGTTGCTATCCATCACTGCGGTtcttgcgataaaaagttttcaaagaTAGAAGGCTTAGAAGCCCATTTGCGTAGAAAGTCTCACGTTGCAAAAGAAACTAATACGGACGTGGACGATGACACTTATCATGATCAAGAAGGATTTGACGATCCTGACGATACAGAATTGCAGTCTATTCCTGCCTTGCAAATCCCATCGCATGATACGCTGCAGAGACTACGCCAGGCGCTAGAAgcgaataaataa
Protein Sequence: METENHSEEECSGSEGNIDGEEESIRIKEEVDDEEIDEDVSIEEPEMEEVEPEKKKTGNRRNQMFKSRTPAKIETTQNSDEELSNNESYDEYSSSETEGEIEIPIEVDMGDDNRNPEVTLENQEQENKYPDIIPADGQPIPVVTIKQEYDEDEEMLFKEDEEMLEEGEEQSGEDKKDASVDKKEGIIRRRRRKGPKPEATDEDLRKINIRLSFICQLCNEKCADTLSLGVHMKTLHSEQIGTYMCSTCQRVYQTAESLRAHMLCHVQLGSYECTDCKKIYHHPASLMSHRRRWHKKEGQPHECKQCGKTYSILSDLNTHMKSHTPQSFPCKHCDKAFRTERYLRLHTRHIHLGHKQLKLECKVCHKSFQKKSLATHMKTHQAGSVPLHKCHYCGKCVTTQYSLMAHVRRHEGVKPFVCHICEKGFVDKGKLARHINSHSGSRDFQCDVCKKTFSEKQYLRQHRRTHDEAKDHPCRMCGAIFKSLNSVWSHMRKHTQSDRYKCHLCGKTCYRPDHLRSHMVSHTGVKEYQCEICSKRFAKPYDLTEHMRSHSGEKPFPCTLCDRAFARHGEFRASILFQRVPKAFCALLTAKVFHSLVLVDKHKMSKYHREREIEAGLPPSFPVLPPRPPKSVAIHHCGSCDKKFSKIEGLEAHLRRKSHVAKETNTDVDDDTYHDQEGFDDPDDTELQSIPALQIPSHDTLQRLRQALEANK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -