Mlon011744.1
Basic Information
- Insect
- Mystacides longicornis
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963576905.1
- Location
- OY756424.1:34232010-34234886[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.019 1.9 10.3 2.3 1 23 28 50 28 50 0.98 2 19 0.0057 0.58 12.0 1.7 1 23 56 78 56 78 0.98 3 19 0.01 1 11.2 1.3 1 23 84 106 84 106 0.95 4 19 0.00015 0.015 17.0 1.3 1 23 143 165 143 165 0.94 5 19 0.043 4.3 9.2 0.6 1 23 206 228 206 228 0.98 6 19 0.012 1.2 11.0 5.0 1 23 234 256 234 256 0.97 7 19 0.0045 0.45 12.3 2.9 1 23 340 362 340 362 0.98 8 19 2.6e-05 0.0027 19.3 0.3 1 23 368 391 368 391 0.97 9 19 3.7e-06 0.00038 22.0 1.8 1 23 397 419 397 419 0.97 10 19 0.00041 0.042 15.6 3.9 2 23 642 663 641 663 0.97 11 19 0.0003 0.03 16.0 2.3 1 23 669 691 669 691 0.98 12 19 2.3e-06 0.00024 22.6 2.8 1 23 697 719 697 719 0.97 13 19 0.00051 0.051 15.3 3.7 1 23 728 750 728 750 0.97 14 19 0.0003 0.03 16.0 6.9 1 23 759 781 759 781 0.99 15 19 0.22 22 7.0 0.5 3 23 789 809 787 809 0.94 16 19 0.0019 0.2 13.4 2.4 3 21 817 835 815 837 0.92 17 19 5e-06 0.00051 21.6 3.1 1 23 843 865 843 865 0.96 18 19 0.00023 0.023 16.3 2.0 3 23 873 893 871 893 0.95 19 19 0.00033 0.034 15.9 4.0 1 23 899 923 899 923 0.91
Sequence Information
- Coding Sequence
- ATGATTAGTTCATTGAAAAAAACTTGTGTTACAGATGAGGTGAGTAATAAATGCATTCAAAAGAAAGCATCCAAGAGGATATACAAGTGTCAAGATTGTGGCTTTATGACTAAAAAGGTTCGCCAGATGCAGGTCCATCTCCATGTTCATGAACCAGAAAAACCATTTCAATGTGACATCTGTATGAAGTCTTACAGCAAACTTAGTGTGATGAAGAGGCATCGGATGTCGCATTCAACACAAAAGAACTATTTATGCGACCTGTGTGGCAAATCTTACAATCAAATTATGAGTTTCAAATATCACAAACTCAGCCACATGAAGTTCCTAGAAGATAATAACAAAGCTGATAGAATGTTCCAAAACGCCACCAGCTTACAAAATTTAGGTGTAGACTCAATCAGAAATGAAACAGCAGAGAGGAGGTTTTTGTGTGATCTTTGtggaaaatttttcaaacagtCAATTACTTTGAAGGTTCACAAAAAATGGCACGAGAAAAACAAAGACTGGCCTGGTAGAATTAAAGGTGTCAGGAATGCCAAGAATCTGGCAAAAATCAGACTGCTCAAAAGAAATCATTCTGAGAGTAGTATTTTGGAAAAACGAAAACCTTTTAAGTGTAGTGAATGTCCATTTATGGCATCTCATGCTCGGGATGTTCTATCACATATGTATGTTCACACGGGCAAGAAGCCGTTCCATTGCCATATCTGCAAAAGATGGTTTTCCAAACCTAACACATTGAAGAGACATGTGTTGTCCCATGATAGTACAAAGTCAATGGTGAATGGCAAGAAACCATTTGATAATAATTCTGGTACAAGTGGTTATGATCAACTACCACAGATTGTTACTGTGAATGCTTCCACGCTTGATTGTGACAAACCTCCACAAGGAACTTTTGCAAGTGTGACTcctgtaatattgaaaattgaaaatcctaaaagtaataaaatgacaaataaagcaaataccatagcagagaaaaatttcaaacaacgTGGGAAAAAAAGATACTGTTGCGACGAGTGTCCTTACTCATCTCAGTCCTCTCGAGACTTGAAAGTGCACAAACGTAGGCACACTGGAGAGAAGCCATATGCATGTACTGTTTGCAACAAAGCATTTGCCAATCGCAGTGTAATGAAACGTCACATTTCAACAGTTCATTCAGAGCAGCGTGCCCATATATGTTCTATATGTGGTAAAGGCTACACGCAATCCAGTAATTTAAAGATGCACAAATTGACACATTATAACATTACGACAGGAGAGCTAATCTCACAGGCCCCTGCAGCAGAAGATAACTGTCATGTGCCAGCTAACACGACATCCAATTCTTTTGGTATTGTGGACAGTGGTCAAATTATCAGTAGTACGTCTCGCAAAATCACCGAGAAGTGTGCAGAGATCAATGAATCAGTTAGCAACTCAACATTATTCTTTGAGAAAATTTCAGATTATCAAAATACAGAAGTTTACAAAAGATCAATAAAAGATATTGCAAATGTAGAAGATTATGATGATTCTATTACTGATAATGATTTTGCTGATGATGCCACCGTCAGATCACTGTGTGATAACCTAAAaaatgttagtaataatgaagAGGAGAAATGTAATATAGAAAAGATTATGAACACTGAACAATGGGTTGTAACAGAAAATAAAGAGgaatttgatataaaatgtaCCAACATCAAAGACAAAACCAAAGGTTTTGATGAAACTGATGACATACCtttaatatttcaaatgaaGAGTTTAGATAGCTCTTCTCATAATAAGGGGGGtcaatttgaaatgaaattattaaaaaaacaaagcaaAACTATTCAAAAGAGAAGAGAAAAATTCCAGGGTTCGGGTCGAATGAGTGATATAAATCCCCAAGTTGAAATTAGTAAAGAAATTCTGCTGAAATGCAGTCAATGCCACTATACTGTGACAAAAAAACGTGATTTAGAAAGACATTTACGCTCACATAGCAAAgagaaaccatacgaatgtgatATATGTAAACGTCATTTTTCAGATAAAAGCGTAGTTAAGCGACATAAATTGATTCACTTTGGGATAAAAAAGTTTACTTGTCATTTCTGTGGTAAAAAATTTTCACAATCGACTGGTTTAAAAGCGCATATGGTAAGTCACACAGGCAGACCACCAGTTCTACCACACACTTGCGATCTGTGTGGCAACACTTTCTCACAACTGAAGAGTTTAAAAGCTCATCGGCATGTGCATTTTCGTGGAAATTACTCTACTCAATATACTTGCAAAGACTGTGGGAAATGCTTTTCCTTTGAATGTAGATTGAAAGAACATCAActaactcatagcggagaaagaAAAATAGCTTGTGACTTGTGTGATAAAAAGTTTTTAAGAGTCAAAGATATGCGATCCCATCGTCTGTTGCACACGAGAGAACAAAAAAGTATATGTGATAAGTGTGGGAAGTTCTTTGCCACTCCCAAGACTCTGAGGTTGCACACTCAGTGCCACTCACAAGAGAAGCCCTTCGTCTGTCATGTGTGTGGCGCAACGTTTTATCGCCAAAGCCATTTAACAAGACACACCGCTCTACATACTGGTACAAAGTCCTTTGGTTGCACTTTATGCAGTAAACGCTTTACTCAGAGAAGTGCATTGAATCGTCATACATTTCTTCATTCAAATACCACGCCTCACTCATGTAACGTGTGTTCCAAGCAATTCAAGATGCTAGACAACctcaaaaaacatattaagcGTACAAAGCATCTTGAAGGTAATGATTCTGCAACTGCTTCTGGAAATGCTCAGAATATTCTGAAACTATCCACACTCAACAACACTCCTCACATTGCCAATCAGTTACCTAACGGATGA
- Protein Sequence
- MISSLKKTCVTDEVSNKCIQKKASKRIYKCQDCGFMTKKVRQMQVHLHVHEPEKPFQCDICMKSYSKLSVMKRHRMSHSTQKNYLCDLCGKSYNQIMSFKYHKLSHMKFLEDNNKADRMFQNATSLQNLGVDSIRNETAERRFLCDLCGKFFKQSITLKVHKKWHEKNKDWPGRIKGVRNAKNLAKIRLLKRNHSESSILEKRKPFKCSECPFMASHARDVLSHMYVHTGKKPFHCHICKRWFSKPNTLKRHVLSHDSTKSMVNGKKPFDNNSGTSGYDQLPQIVTVNASTLDCDKPPQGTFASVTPVILKIENPKSNKMTNKANTIAEKNFKQRGKKRYCCDECPYSSQSSRDLKVHKRRHTGEKPYACTVCNKAFANRSVMKRHISTVHSEQRAHICSICGKGYTQSSNLKMHKLTHYNITTGELISQAPAAEDNCHVPANTTSNSFGIVDSGQIISSTSRKITEKCAEINESVSNSTLFFEKISDYQNTEVYKRSIKDIANVEDYDDSITDNDFADDATVRSLCDNLKNVSNNEEEKCNIEKIMNTEQWVVTENKEEFDIKCTNIKDKTKGFDETDDIPLIFQMKSLDSSSHNKGGQFEMKLLKKQSKTIQKRREKFQGSGRMSDINPQVEISKEILLKCSQCHYTVTKKRDLERHLRSHSKEKPYECDICKRHFSDKSVVKRHKLIHFGIKKFTCHFCGKKFSQSTGLKAHMVSHTGRPPVLPHTCDLCGNTFSQLKSLKAHRHVHFRGNYSTQYTCKDCGKCFSFECRLKEHQLTHSGERKIACDLCDKKFLRVKDMRSHRLLHTREQKSICDKCGKFFATPKTLRLHTQCHSQEKPFVCHVCGATFYRQSHLTRHTALHTGTKSFGCTLCSKRFTQRSALNRHTFLHSNTTPHSCNVCSKQFKMLDNLKKHIKRTKHLEGNDSATASGNAQNILKLSTLNNTPHIANQLPNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -