Mlon002611.1
Basic Information
- Insect
- Mystacides longicornis
- Gene Symbol
- -
- Assembly
- GCA_963576905.1
- Location
- OY756421.1:413019-416366[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.067 6.8 8.6 0.2 1 23 75 97 75 97 0.95 2 20 0.00045 0.046 15.4 4.3 1 23 104 126 104 126 0.98 3 20 0.75 76 5.3 3.4 2 23 133 154 132 154 0.94 4 20 0.00066 0.067 14.9 2.1 1 23 160 183 160 183 0.97 5 20 5.7e-05 0.0058 18.3 0.3 1 23 271 293 271 293 0.98 6 20 0.0078 0.79 11.5 1.4 1 23 299 322 299 322 0.94 7 20 3.8e-05 0.0038 18.8 0.7 2 23 329 350 328 350 0.94 8 20 0.00016 0.016 16.8 4.5 1 23 356 378 356 378 0.95 9 20 5.7e-06 0.00057 21.4 1.6 1 23 444 466 444 466 0.96 10 20 0.011 1.1 11.1 0.2 2 23 652 673 652 673 0.97 11 20 0.00032 0.032 15.9 3.0 1 23 679 701 679 701 0.98 12 20 0.0004 0.04 15.6 0.9 2 23 708 729 707 729 0.96 13 20 0.0018 0.18 13.5 8.4 1 23 735 757 735 757 0.97 14 20 9.6e-05 0.0097 17.5 4.4 1 23 798 820 798 820 0.97 15 20 0.22 22 7.0 0.7 1 19 937 955 937 957 0.94 16 20 0.0029 0.3 12.9 0.9 1 23 963 985 963 985 0.97 17 20 0.028 2.9 9.8 2.3 1 23 991 1013 991 1013 0.97 18 20 2e-05 0.002 19.7 1.1 1 23 1019 1041 1019 1041 0.95 19 20 0.00022 0.023 16.4 3.3 1 23 1047 1069 1047 1069 0.98 20 20 0.00017 0.017 16.8 3.7 1 23 1075 1097 1075 1097 0.96
Sequence Information
- Coding Sequence
- atggaggaAGTAAGAATAAAAGCCGAAATAGAGAGTGAAGATAACTGTCTTAACTGTAATGTTTCAAAGGAATTATTGGAATTGGATACCGTATCAGTGGATGGAAGTACGTCTGAACATGAGAAAAATAAATCTTCGGCAAGTGAACCGCtggattatttaaataaagaagGTGCGGAGTATGTTTCTTCTTCGCAGGTAAATTTGGATCAATATTCATTGCACATTTGTGTTTTCTGTGGTGAAACTTTTGAAACACTCAAGATTCTAGAAAACCATCTGGCCATTCATGGGGATCAGGGGCAATACTTCAAATGTGACCAGTGTGACAAGCAGTACAATGACTACACCAAATTAAAAAGACACAGATACACACACAGATATGAAACATCCATCAGATGTGAAATATGCAGCAAATACTTCAACTGTGTGTCCAGTTTTAAAAGACACTTGTTTTTGCACACTGGCTTGAAGCCATTCTCCTGTCTTCACTGCAGCGAGTCATTCACCCGGCGAGATAAGGTCAACATGCATATGTTGAGCGTACATGGATTGAATTTAGCCGACTGTCTGAAGTATCAGAAGCACAAGGAAAACATCCTGGATAGCAGTGAAATAGCTGAAAAACATCCAATCAACTCCATTATGAGGTGTGAGGAGGATGCTTCTGCCAAACCTGCAAGTGACGGCTGGGACACATCGGAACGCTCTGATGATTTACCAGGGGTCAATGGTGAATGCGGAGCCCCAAGTCCAAGTAAGGAAGCATCTCACGATGAGATTGACTTAAATCCTAAATCTTTGGGTTCGTACCCATGTGATATTTGTGGAAGAAACTTCGTGAGTCAATACATTTTGACGCGACATTTGACAACACATAATACAGATAAACCTTTCAAATGCAATTTATGCTACAGGAAATATCGGGACCCAAATAAACTGaacgaacataatattaaagtacaTAATTCGGGTGAACCAATCTATTGCGACGTGTGTTTTAAAACATTCAATGACAAAGCCAACCTGAGGCGCCACAAAGTTGTCCACAGTGGGTCCAGACCATTTGACTGTGATTTGTGTTCAAAAAAATTTACCCGGAAAGACCATTTAAAATCACATAAACTCTTGCATGCATGGAATGGTCAAGACAAAGAGGGTAGCTGTAATGCTGCAGACTCCACTAATTCGGACCCCACCACCTCTTTGTTGTACAAAAGTGGCCAGCAGAATTTGTCACAAAatcaaataactttttatagGAAATTGTATCAGAAAGCTATTAAAACtgttataaaagaaaagaaaaataccaAGTCCAAACAAATGTACAAATGTCAGCAATGTAATAAGATATTTGCCAAGAGCTCTAATTTGAAGAGACATTCAGAAATTCATGTGAGAGGAAAGCTTCCcaagaaaagtaaaaaaactgCTAAACTAaggaaaaagagaaaaggaatCAGAAATATGCAGAGAGTTTCTATAAACAAAGCTGAGGAAGTTGGCAAGTCCTCTACTGCTCTTGTGCTATGGAGCCCCGACTTAGATTCTGAGCAGTTGGAAGAGACAAATACATGTGGGGACATTCCAAATGGCCAAGATGTTCCTCACACCAATCCCAAAGAGGACATTTCCAGTGGCAGCCTGGCGGAATATCCAGATGGAGAGGGTGATGTGGGCTCCGTGTTCTTTCCTGGAAACAATACGAACTCAGGATGTAAAGACCTCTCTTTGTCCACTAATTCATCCTTAGAAGACTTGAGTGGTTGCTCCAATGTGGCTGATTTGATAGACCCTCACCACATAAAAAGTGAATTGATTGAAGGTTGCCAGGATATGAGCTACAGCAATGAAGTAGCTAGTGTGACTATTGACAGCCTCAATGGATCCCCTCCCGTGTTCATTGATATTGAGCAAGCTATAGCAAAGTGCAGAGAAACTGGGATCAATTATTGTGATATTTGTGAGAAAGATTTTgctaatttattcattttgaaaCGTCATTTGATGATCCATACGGGAGAAAAGCCTTTTGAATGTGAACAATGCTTTCGTCGCTTCCGTGATCTTAGTAAACTCAAGGAACACAAGAAAATGCATGATTCTAACACAATATCGCGCTGTGATGTATGTTTCAAAAAATTTGCTGATGTGGCCAATTTAAAGCGACACAAACAACTCCACAGCGCTGATAAACCTTTTGTGTGTGAGTTTTGTTACAAATCGTTTCATCGTAAAGATCATCTCAAAAACCACATTTTGCATCATCTGTGGAATGAAGATAAGAAGAGTGAACATTTCAATGATGGTGATGGTACTAATGTTACAATAAAATGTGAAACGGGTGACAACCTGGATTTGAATAGCAAACCAATAGTCaggaaatattttgaatgtacTATTTGTTTCAAGGTTTATACAAAGTGCAGcaatttaaagagacataaaTTAATTCATTTAGATGACGATACTGCACGGAATGATTCCTACATTGAACCTGCCAGCGTCAGAAGTGGTTTGGCAGAGGCAGAGGGTGAAGATAATGACATTGCTTCAAAATCTATTGATGCCGAATGTGAAAATCACAGTAGCTGTGGCCTGGAGGGCAGGAAACGTGAAGAAGTTGGAGGTTCGGGGGAATCCAAACCTAACTCAGAGACTGACGTTGAACAAAACACTTTGATGGAGGTGTCAGTGCCCAGTATTGATGATGAAGGTGATGAAGAGTACCTTCCCAGTGATGtgaagaaaccaaaaaaaaggggaaggaagaaaaaagaaaggatGTTTCCAAAAAGAACTGAATTTCCTTGTAAACTTTGCAGCGTTGTCTATGAAACGCGATTACTACTGCGGCGCCACGAATGTCCCAACAAAGAAATATTTACTTGTggagtttgcaataaaaagtttttgtaTTTGTCTTCTTTACGGACACACCAGGTTGTACATAGTAAAGAAAAACCCTTCGAGTGCCCGGTTTGTATGAAGAGGTTTTCATTAGTTCACCACCTCAAGGGACATCTTATGTTGCATTCCGGAGAAAAACCCTTTCAGTGTGAAGTGTGCAGTAAAGCTTTTGCCAGTTCTagtgatttaaaaaaacacaacttcTCACATACGGGAGAGAAACCATTTTCCTGCGACGTTTGTCAGAAAATGTTCAAGAGACCGTGCGATGTGACACGACACAAACTGACGCACAGCGGTGCCCGCCCCCACATATGTGGCTACTGCAACAAGAGGTTCACGCAGGTGCAACATCTCAACTCCCATTTGATGATACATTTCAGAGAGTTCCAACCGGCCGAGTCCAGTGAAGTGGTCTTTAAGGAGAGCGAATGA
- Protein Sequence
- MEEVRIKAEIESEDNCLNCNVSKELLELDTVSVDGSTSEHEKNKSSASEPLDYLNKEGAEYVSSSQVNLDQYSLHICVFCGETFETLKILENHLAIHGDQGQYFKCDQCDKQYNDYTKLKRHRYTHRYETSIRCEICSKYFNCVSSFKRHLFLHTGLKPFSCLHCSESFTRRDKVNMHMLSVHGLNLADCLKYQKHKENILDSSEIAEKHPINSIMRCEEDASAKPASDGWDTSERSDDLPGVNGECGAPSPSKEASHDEIDLNPKSLGSYPCDICGRNFVSQYILTRHLTTHNTDKPFKCNLCYRKYRDPNKLNEHNIKVHNSGEPIYCDVCFKTFNDKANLRRHKVVHSGSRPFDCDLCSKKFTRKDHLKSHKLLHAWNGQDKEGSCNAADSTNSDPTTSLLYKSGQQNLSQNQITFYRKLYQKAIKTVIKEKKNTKSKQMYKCQQCNKIFAKSSNLKRHSEIHVRGKLPKKSKKTAKLRKKRKGIRNMQRVSINKAEEVGKSSTALVLWSPDLDSEQLEETNTCGDIPNGQDVPHTNPKEDISSGSLAEYPDGEGDVGSVFFPGNNTNSGCKDLSLSTNSSLEDLSGCSNVADLIDPHHIKSELIEGCQDMSYSNEVASVTIDSLNGSPPVFIDIEQAIAKCRETGINYCDICEKDFANLFILKRHLMIHTGEKPFECEQCFRRFRDLSKLKEHKKMHDSNTISRCDVCFKKFADVANLKRHKQLHSADKPFVCEFCYKSFHRKDHLKNHILHHLWNEDKKSEHFNDGDGTNVTIKCETGDNLDLNSKPIVRKYFECTICFKVYTKCSNLKRHKLIHLDDDTARNDSYIEPASVRSGLAEAEGEDNDIASKSIDAECENHSSCGLEGRKREEVGGSGESKPNSETDVEQNTLMEVSVPSIDDEGDEEYLPSDVKKPKKRGRKKKERMFPKRTEFPCKLCSVVYETRLLLRRHECPNKEIFTCGVCNKKFLYLSSLRTHQVVHSKEKPFECPVCMKRFSLVHHLKGHLMLHSGEKPFQCEVCSKAFASSSDLKKHNFSHTGEKPFSCDVCQKMFKRPCDVTRHKLTHSGARPHICGYCNKRFTQVQHLNSHLMIHFREFQPAESSEVVFKESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -