Mlon004495.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mystacides longicornis
Gene Symbol
-
Assembly
GCA_963576905.1
Location
OY756421.1:33117987-33130443[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.00018 0.018 16.7 5.5 1 23 232 254 232 254 0.97
2 13 1.9e-06 0.00019 22.9 0.4 3 23 268 288 267 288 0.97
3 13 0.0007 0.071 14.8 3.3 2 23 297 318 297 318 0.98
4 13 6.2e-06 0.00062 21.3 0.4 1 23 324 346 324 346 0.97
5 13 2.7e-05 0.0027 19.3 1.4 1 23 352 374 352 374 0.95
6 13 1e-05 0.001 20.6 7.4 2 23 381 402 380 402 0.97
7 13 2.3e-05 0.0023 19.5 1.0 1 23 408 430 408 430 0.98
8 13 1.5e-06 0.00016 23.2 1.3 1 23 436 458 436 458 0.99
9 13 4e-05 0.004 18.8 1.0 1 23 464 486 464 486 0.98
10 13 8.6e-05 0.0087 17.7 2.4 1 23 492 514 492 514 0.98
11 13 0.00058 0.059 15.1 1.1 1 23 520 544 520 544 0.92
12 13 9.2e-05 0.0093 17.6 1.0 1 23 550 572 550 572 0.98
13 13 2.9e-06 0.00029 22.3 0.9 1 23 618 640 618 640 0.97

Sequence Information

Coding Sequence
ATGGCTACTAGTGTCGATATGCAGCTTGACAAAATATGTAGAGCATGTTTACAAATTAAAAAGGACATGAGACCACTATTCAATGAACTTATAGCTGAAATGTTAATGTCTTGCGCTTCTGTGCAgGTGTGCACCGCAGATGGTCTTCCCTCTCAGTTATGCATACAATGTGTGCATCAAGTTTCCCGCAGTTACGCATTCAAACAACAAGTGGAACGTTCCGACATCAAATTGAGGGAATACATCGAAATATACCCtgataaaattgttgacaaggGGGCCTCAAAATTAGACACCATAGGAGAATTAATAAGCGGAGGGAATGTGTCCGACAATGAAGAGCATTATACATACATGGACAATTCTGAGAGTTGTAACAACGTAGGCTTAACAAATGGTTCTGCAAGTGATATAGACACCAATACCACAGTTCATACCATTGCTGGGGACGGAACTACACTGGAAACATACTACATTACCACTCAAAATACGGACAATGGGGCAGTTTTAACTATGCAGGCCGAAGATATAAAACTGGAGAAAGAACCACCAAAATGTAGCAATCTGGACAAGTCTATGGAGACTGACGCATTCAATCTGCTAGTTGGAGAGAGTGAAAATGAGTTGGATGATGAGGAGAAGTATTTGGAGTTGGCCAGCTTCCAAGCCTCTGCATCCATAGCGCCCGGGAGACACATATGCAACCTTTGTCACAGGGAATTCAAATATTCTAAAATGCTGAAAGCGCATATGAAATCACATACTAATTGGATAAAGGCGAATTGTAAAAAACCACCTATGTGTAATATTTGTGGGCGCACATTCAAAGGGCCAGGAATGCTCCGACTGCATATGAAAACTCATGAAGAAAAACCTCAGAAGCCTCCCACATGCACCATTTGTCAAAGGCAGTTTAAGACTAAAACAGTTCTCTATAGACACAGGCAGACACACTTTGAGcaaAAAACACATCCATGTACCATTTGCGAGAAAAGTTTCATAAGCAATTACGCTTTACAAGCACATTTAGCTAGACACAGAGGGGAGAAAACTCATGCATGTGTCACTTGTGGAAAGACGTTTTACAACACCACGGATCTCAAGGTTCATATACGTCTACATACGGGTGAGAAGCCATTACGGTGCACAGATTGTGGTAAAACTTTTAGAAGACATTCAACACTTTgtcaacatttaaaaaaacatagggGAATCAGAGATCATGTTTgcgaaatatgtaaaaaaggaTTTTACGAAATGTCTAAATTAACAGCGCACATGAGGGTTCATActgGAGAGAAACCATTTGAATGTCAGTACTGTTCCCGATCGTTTGCCCAACAATCAGCCTTAATATATCACCGTAGAACACACACGGGAGAAAAACCTTATCCTTGTAAATTCTGTGACGCCAGGTTCACAACTTCTTCTGCAAGAAATAACCACATGCTGACTCATACAGGAGTCAAAAAGTTCCAATGTGTTGTGTGCAATAAAGGATGTAGCAATCGTACTGATCTTCGAATACATATGACTAAACATACTGGTGAAAAACTGTTTCCATGTTTGTACCCAGATTGTAATCAGAGATTCACCACGGCATCCTATTTGGCCATACACAAGAGGCATCATACGGGAGAGAAGAAATTCAACTGCCCTACATGCCAGAAAGGCTATGTTGAATCGGGATCATTCAAACGACATCTTAAAACACATTCAAAGCACCAAATAGAGGCTGCGAAACAAGATAACGAAAATAATGACAGCAACAGTAGCAGTAGCAACAATGATACTTCATCCAGTGGACAGCAGCAGCTCACCAATGAACTTGCACAATCTCAAGCCAAAACATTTGCATGCACTTTGTGCCCCAAATCTTACACACAGGGACAAAATCTGAAGAAACATATGATGACGCACGGACTCTTGAATCAGGCAACATTAGCGGTGGTGACCACAAACCCTCACCAACAAACCCAACAACCACAAGTGACGGTTGTAACTACGCaacaacaacagcaacaaaaccAGCAGGCGCAGCAACAGCAAGTGATACAACAACAGGTTATTCAGCAGCAACTGGTACAACAGCAACCACAGCCTCAACTGCAAGTTCAAACCATACAAATACATCCACAACATGTCACTGCACAACCCATACAAATACACGCTGTTGGCGTGCATCAAGTCCAACAACAGCAAGTTCATGTGGCAGCTTCAGCGTGTCAACCAACTGTTCAGATACCAAATATTGTACAGGTGCAACCAGCACACGTAGCCGTGGCGGGCTTACAGCAGCATGAATTATCCACAGTGTCTGTAGGAAACATCGCACACAGATTCATATTGCAGCCACCACATTCCATGTATTTGCACCACTAG
Protein Sequence
MATSVDMQLDKICRACLQIKKDMRPLFNELIAEMLMSCASVQVCTADGLPSQLCIQCVHQVSRSYAFKQQVERSDIKLREYIEIYPDKIVDKGASKLDTIGELISGGNVSDNEEHYTYMDNSESCNNVGLTNGSASDIDTNTTVHTIAGDGTTLETYYITTQNTDNGAVLTMQAEDIKLEKEPPKCSNLDKSMETDAFNLLVGESENELDDEEKYLELASFQASASIAPGRHICNLCHREFKYSKMLKAHMKSHTNWIKANCKKPPMCNICGRTFKGPGMLRLHMKTHEEKPQKPPTCTICQRQFKTKTVLYRHRQTHFEQKTHPCTICEKSFISNYALQAHLARHRGEKTHACVTCGKTFYNTTDLKVHIRLHTGEKPLRCTDCGKTFRRHSTLCQHLKKHRGIRDHVCEICKKGFYEMSKLTAHMRVHTGEKPFECQYCSRSFAQQSALIYHRRTHTGEKPYPCKFCDARFTTSSARNNHMLTHTGVKKFQCVVCNKGCSNRTDLRIHMTKHTGEKLFPCLYPDCNQRFTTASYLAIHKRHHTGEKKFNCPTCQKGYVESGSFKRHLKTHSKHQIEAAKQDNENNDSNSSSSNNDTSSSGQQQLTNELAQSQAKTFACTLCPKSYTQGQNLKKHMMTHGLLNQATLAVVTTNPHQQTQQPQVTVVTTQQQQQQNQQAQQQQVIQQQVIQQQLVQQQPQPQLQVQTIQIHPQHVTAQPIQIHAVGVHQVQQQQVHVAASACQPTVQIPNIVQVQPAHVAVAGLQQHELSTVSVGNIAHRFILQPPHSMYLHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-