Mlon029397.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mystacides longicornis
Gene Symbol
Znf296
Assembly
GCA_963576905.1
Location
OY756433.1:11660677-11674449[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 9.6 9.8e+02 1.8 0.6 2 21 178 197 177 198 0.89
2 15 0.0011 0.11 14.3 0.2 2 21 205 224 204 227 0.89
3 15 0.00013 0.013 17.1 1.0 1 23 255 278 255 278 0.92
4 15 0.024 2.5 10.0 2.2 3 23 353 373 352 373 0.98
5 15 2.5e-05 0.0026 19.4 4.1 2 23 380 401 379 401 0.97
6 15 1.2e-05 0.0013 20.4 2.4 1 23 504 526 504 526 0.97
7 15 0.015 1.5 10.7 0.1 1 21 533 553 533 554 0.92
8 15 0.00016 0.016 16.8 0.4 1 23 563 586 563 586 0.96
9 15 5.5e-06 0.00056 21.5 4.1 1 23 607 629 607 629 0.98
10 15 8.5e-08 8.6e-06 27.2 1.6 1 23 636 658 636 658 0.98
11 15 1.7e-07 1.7e-05 26.2 2.0 3 23 671 691 669 691 0.96
12 15 7.8e-06 0.00079 21.0 2.5 1 23 697 719 697 719 0.99
13 15 1.5e-06 0.00015 23.3 2.2 3 23 727 747 725 747 0.97
14 15 1.8e-07 1.8e-05 26.1 1.6 1 23 753 775 753 775 0.99
15 15 0.008 0.81 11.5 0.0 1 23 781 805 781 805 0.93

Sequence Information

Coding Sequence
ATGGCGGACGTAAGTGATATATCAGggatagaaataaatttagagaaAGTGTGTAGGACTTGTTTACTGGAATGTGAGGATATGAAATCGGTATACAGCACGTACAGCAGTTTTGGTGGGTCAAATTTTAGCACGATGATTTCGTCGTGCACACAATTAAAGGTAATGGAGGGCGATGGTTTGCCAATTCACATATGTGCTAAATGTATCAACAATCTTATGGTCTCGTTTTCATTTAAACAAGAGGCAGAAAAGGCAGATGCCAAATTAAGAGAATATGTTATAAGAAAGCATCCTAATATACCTGTCAAACATCCTATAAATATCAAAGAAGAGAATCAAGGGCTAGATAATATATTAGTTAAAGATGAAATGAAGAATGGGGATTTCTCCAACTTTTCGGTGCAGAACCATTTTGAAGATTCATTTCAAGATCATTCTGACGACTCTGACGATGACTGCAGGCCTCTTAAAGAattacaaacaaacaaagagAAAACTATTTCAAACAGTGTAGACCAAGAAGCAATCACTTGTGACTGTTGTAATCAGATATTCTTAAACAGCGCAGAACTAGAAACACATAGAAATAAGCAGAATGCAGGTTTCGTCCAGTGTGATATTTGCTATAGAGCTTTCACTACTGAACAGTATCTAAACAGACACAAAGTAGCTGCTCATTCTAAACTTCCTCTAGCTAAAGAAGATGTTCCTAATAATGGTATAGTTGAACCGAGCGCGGAACTGGTTTCCAGTCAACTCTACCTCTGTAAATTTTGTGATTATTCCTTTAAAAGAGAGGACCAGCTCATTTCCCATTTGTCTCTTTCCCACAATGAGAAATGTGGTCCCAAAAAGCGAGGCAGGCCCTCGAAGAAAGATATTCTAGCAAAAAAAATCAGGTTAAAAGGAATTTTGGAAACGATGAACATCAAAATAGAAGCTGAAGAAAAATTACCAATGGAGTTGAAGGACGGTGAGGATTGCTTCCCTGAAAAGTACAAACTTGTGAATGATCCAGACTTTGATCCAAGCACGtctaataaagaaaatttttgtAATCTGTGCTCCAAGAGATTCTTATCTACAGACTTATTAGAAAAACACTTAAAGAAACATTTAGatggCCAATTTTTAGTATGCAAACTATGTAGAAAAAGTTTCAATAAACTAAGCCATTTGAAAAAACATATATCAACACACACGACGCTGGACTCGTTATCCCGTATGGACTTCAAAGCTAAAACAATTATGCTTAGTGACCACGATAGAATTGTGGATATAAAAACGGAAGACTTGACTGATGAGATattaaataacattatattaGAAGATATCAAATTGGGTGAGTTGGAAAGGTACATGGAGGAAAGCAAAGTGGAAGCTGTTGATTCTGAAAACTTAGAATCTCAAGATGGCAGTCTGCTGGCAGCGCTTGATAGTGACATTGAGAAAAGTTCAATAGCatcaataaaaagtaaaaaagtaaaaacaagGAAGTGGAAAATACACAAATGTGAAATATGTGAGGAGTCATTTGCAAGGAGCACGCATCTGGTCAAGCATATGAGCGAGCATAAAGAATACAAATTTCCCTTCAAATGTGACTTATGTCCTAAAatgTTTCCTAACGAAGAAATACTGgccaaacataaaaaaatgcaatGCGAGAACAACACCAAGCCTTACGCGTGCGGCACGTGCGGAATGAAGTTCTCCTACGAAATGTCTCTCAATAAACACATCCTTAGAAATCACAAGGGGGAGGCCGTGTCAGTCAACTTTATAGATCCAATTTAtcagaagaaagagaagaagtTTGTGTGCTCCAACTGCAACAAGTCTTTCTATAGGAAGGAGCATCTAGAGAAACATTCCAGAGTTCATTTGCCAAACGAAAAGAAATTCGAATGTCCTATATGCCAAAAGAAATTTAATAGGAAAGATAATTTAAGGTCACATACTAGAGTTCACGAGCCCAACAAAGATGATTTGGAATCCAATTGCCTTTGTGTGTACTGTGGTAGATCCTTTTCTAATTCTTCTAATCTAATAGTTCATATGCGAAGACATACGGGAGAAAAGCCTTACAAATGTGACATCTGTGATAAAGGATTTCCACGTTCTTCGGATTTACAATGCCATCGTAGGACTCATACTGGAGAGAAACCCTGTTTGTGTACCATTTGTGGAAAAGGTTTCTCCCGGTCTAATAAACTGGTTCGCCACATGCGAATACACACCGGACAGAGGCCATACAAATGCACATATTGCGATAGAGCTTTTACGCAGAGTAATGATTTGACGTTGCATATAAGAAGGCACACGGGCGACAAACCCTACGTTTGTGGGATATGTGGTGACAGGTTCATTCAGGGTACAGCGCTGCAAGCCCATAGAAGAATGCAAGGACATTATGAGAATGGATCAACTCCAGCTCCGTTCTCAGCAACTTCTGTGAACAATCCAAGCAGAGAAAATGCCCCACACAGGGTAGCCCGAGTTGGACAAGTGAAAGAAGAGGGTAATGGCGCACCGGCCACGACATCCGCACCTTCCACATCCACCACGGAAACCCCAGCTACAGAAATACGTTcaggCCAAGCGAGAAGTGGCGCCCAAACTTACAGTGCAAGTGGTGTTGCCGCATTTCTCAACACTCCCGTTTTAATGCCTAGTATAGATGTTACCAACTTACCTCTGTTCTCACTATCACAGTACAACCAGGGATATAATTGA
Protein Sequence
MADVSDISGIEINLEKVCRTCLLECEDMKSVYSTYSSFGGSNFSTMISSCTQLKVMEGDGLPIHICAKCINNLMVSFSFKQEAEKADAKLREYVIRKHPNIPVKHPINIKEENQGLDNILVKDEMKNGDFSNFSVQNHFEDSFQDHSDDSDDDCRPLKELQTNKEKTISNSVDQEAITCDCCNQIFLNSAELETHRNKQNAGFVQCDICYRAFTTEQYLNRHKVAAHSKLPLAKEDVPNNGIVEPSAELVSSQLYLCKFCDYSFKREDQLISHLSLSHNEKCGPKKRGRPSKKDILAKKIRLKGILETMNIKIEAEEKLPMELKDGEDCFPEKYKLVNDPDFDPSTSNKENFCNLCSKRFLSTDLLEKHLKKHLDGQFLVCKLCRKSFNKLSHLKKHISTHTTLDSLSRMDFKAKTIMLSDHDRIVDIKTEDLTDEILNNIILEDIKLGELERYMEESKVEAVDSENLESQDGSLLAALDSDIEKSSIASIKSKKVKTRKWKIHKCEICEESFARSTHLVKHMSEHKEYKFPFKCDLCPKMFPNEEILAKHKKMQCENNTKPYACGTCGMKFSYEMSLNKHILRNHKGEAVSVNFIDPIYQKKEKKFVCSNCNKSFYRKEHLEKHSRVHLPNEKKFECPICQKKFNRKDNLRSHTRVHEPNKDDLESNCLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDICDKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGQRPYKCTYCDRAFTQSNDLTLHIRRHTGDKPYVCGICGDRFIQGTALQAHRRMQGHYENGSTPAPFSATSVNNPSRENAPHRVARVGQVKEEGNGAPATTSAPSTSTTETPATEIRSGQARSGAQTYSASGVAAFLNTPVLMPSIDVTNLPLFSLSQYNQGYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-