Mlon006828.1
Basic Information
- Insect
- Mystacides longicornis
- Gene Symbol
- -
- Assembly
- GCA_963576905.1
- Location
- OY756422.1:30643495-30645900[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.6e-06 0.00036 22.1 0.8 2 23 152 173 152 173 0.97 2 17 3.6e-05 0.0036 18.9 0.8 1 23 179 201 179 201 0.97 3 17 0.00017 0.017 16.8 1.2 1 23 209 231 209 231 0.98 4 17 0.013 1.3 10.8 4.2 1 23 237 259 237 259 0.97 5 17 2e-05 0.002 19.7 0.7 1 23 265 287 265 287 0.98 6 17 0.002 0.2 13.4 0.7 1 23 293 315 293 315 0.96 7 17 0.0051 0.51 12.1 5.2 1 21 453 473 453 474 0.94 8 17 0.0039 0.4 12.5 1.4 1 23 475 497 475 497 0.97 9 17 1.5e-05 0.0016 20.1 1.2 2 23 501 522 500 522 0.95 10 17 0.00024 0.024 16.3 0.5 1 23 528 550 528 550 0.97 11 17 1.1e-07 1.1e-05 26.8 0.9 1 23 556 578 556 578 0.98 12 17 5.2e-05 0.0053 18.4 1.9 1 23 584 606 584 606 0.98 13 17 0.0015 0.15 13.8 3.3 1 23 612 634 612 634 0.98 14 17 1.5e-05 0.0015 20.1 2.8 1 23 640 662 640 662 0.98 15 17 7.9e-08 8e-06 27.2 1.7 1 23 668 690 668 690 0.99 16 17 0.0018 0.18 13.6 1.7 2 23 697 718 696 718 0.96 17 17 4.8e-07 4.9e-05 24.8 5.6 1 23 724 746 724 746 0.98
Sequence Information
- Coding Sequence
- ATGAATGGCTATAATATGAACAGGACCATGGAGGACATAAATTTAAGAATGGTCTCCCATTCGCATCCTCAAGATTATCAACAGCATGTGCCCATGGAATCACAGTATAACGACATGAACTTTGATGTTATTAAACACAGATACGAGCATTACAGTAGAATGATGGACAACAGAAATGACATTCTGAAAGAACATGAACTACCATCAGTTACCCAATACCCACATTATAACAATATGATGCTGCAAGCAAACTCACACATGAATCCTGAACTTCACCATTATGCCGGTACATCTTTGGAGCCTgatttcaaaatggaaaaaaatcattatattgACTCTGAAAATCAATGTGATGATTCTTTTATTAAAACAGTAGACATCAAGTTCAAAAAAAGGAAAGTGGAAGTAAGAAAGGAGAAACCTGAGAGAAGATCTAAGCTTCCTCCACCTCGGGTTTGTGAAATTTGtgataaaacatttaaaagtaCAAATTCTCTCAAGCGCCATTTGTTAATTCACACAGGTGAGAAGCCTTTCAAATGTGATCAGTGTGAGAAATCTTTTCGTGACATGGGTAAATTGAAACAGCATCTAGTGGTGCACGACCTCACCCGAGAAAAGTCTTACGAGTGCGAAGTGTGTAAGAAGAAATTCTCCAGCATTCTTACACTCAAAAGACACAAACTCATTCACAATGATGATAAACCGTTCACTTGCCACGTGTGCCAGAAGAAGTTCATAGATGTTGGCAGGCTGAGGGAGCACAGCCACACTCACACTGCTGAGAGACAATACTCATGTCGTGTCTGTCCAAAAAAATTCACCATAGTGGCTAATTTGAAGCGCCATCTGCAAACACATTTAGGCCTCAAGCCTTATAAGTGTGATTTGTGTACGGGAGCTTTTGCCAGATACGACGCTCTTAAGAAACATAAAACCAACCACATAATACGACAGCTTCAGGGAAGAGAATTAAGAGGGATTCGTCGCATTACACCAGTCGTGCCTGAGGTGAAAAAAACAGATAGTAATTCTACGGAAGAAATTGGGGACAAAAAAATGGATTCAGATGCAAAAGTGGTAGATAAAGCAACTGTCAAAACAGAACCAAGTAATGCCGTTTCTCAAGAATCTGAAGAATTTGTAGAAATTTGCATTCCAAATATTAAAACGGAAAGACCTGATCTGGAAATGGAGGGAGATTACAATGATGCCACTGAAGGTTCGGAACTAGACAAAGGGAATTCAGACGATCCTaagaaaaatgataaatttgttgaaatattcATACCTAGCTTTAACAATTATAATGTGGATGAGGAAACCAAAGAATCTGACGAGGAAGAGGAGAAGAAATATACATGTAAcaagtgcaacaaaaagttcacgTCTGCTGAATCCCAGAAGAAACACAAGTGTCGATATAAATGTTTGATATGTGGTAAGCACTTCCCCAGTATCAAAATACTTTTGAAGCATCTCTCCAGGCACGCTGCTCTAGTGTGTGATATTTGTCAAAAGAGGTTTAAGAAGTCGGGCGATTTGAAGAGGCATAAAATGCTTCACAATAATGATAGGCCGTTCCCTTGCAGTGATTGTAGTAAAAGGTTTATACGATTTAGAGATCTAAGCATTCACAGAGCTGTGCACACTGGCGAGCACATGTTTAAATGTGACGAGTGCCCTAAATCATTCACTCAAGCAAGCAACTTGAAAACTCACAAGTTGATTCATACTGGAATAAAAGCTTTTGAATGTGACGAGTGCCACAAGAGGTTCAGACAACTGGGCGTTTTGAAAGCTCATAAACTGACCCACAGCGGAGAGCGGCCCCATCAATGCGAAATATGTCTCAAGAGATTCAAACAATTGAGTACAAAAACTAAACATCTACTTGTGCATACTGGGGAGAGGAAATTCAAATGTGACAAATGCGAACTAATGTTCAAAAGATTTACTAATTTAAAACGCCATCAACTGGTTCACCAAGATCTAAAGCAGTTTAAATGTGAAGAATGTGGCAAGGAGTTTAAACGTTTGAGCAGTTTGAAAACGCACCAGCTTACTCACACCGGGGAGAAACCATTGAAGTGTGATCTTTGTATGAAAAGTTTTGCCCATCCGACAAGTCTCAAGTCTCACAAGATGATACACAGTGGTGAGAGGCCACATCAGTGTGATTTGTGCGACAAGAGGTTCACCCAATCCAGCAATTTGAAAAGGCATCGAAAGAGACATGATAATCCAAATTACGGAATACGAGGAATGGTTTTTTCCCCAGACGAATTAGGCATTCCTATGCCGGTTATAACACCTCGCAGTGTGCCCACGGAGGAGATATACGCTGCTGTTGGGATAGTTCCACCCGCCAGTGTTCTTCCCTTGAATGTTTCTAAAGAGCTATAA
- Protein Sequence
- MNGYNMNRTMEDINLRMVSHSHPQDYQQHVPMESQYNDMNFDVIKHRYEHYSRMMDNRNDILKEHELPSVTQYPHYNNMMLQANSHMNPELHHYAGTSLEPDFKMEKNHYIDSENQCDDSFIKTVDIKFKKRKVEVRKEKPERRSKLPPPRVCEICDKTFKSTNSLKRHLLIHTGEKPFKCDQCEKSFRDMGKLKQHLVVHDLTREKSYECEVCKKKFSSILTLKRHKLIHNDDKPFTCHVCQKKFIDVGRLREHSHTHTAERQYSCRVCPKKFTIVANLKRHLQTHLGLKPYKCDLCTGAFARYDALKKHKTNHIIRQLQGRELRGIRRITPVVPEVKKTDSNSTEEIGDKKMDSDAKVVDKATVKTEPSNAVSQESEEFVEICIPNIKTERPDLEMEGDYNDATEGSELDKGNSDDPKKNDKFVEIFIPSFNNYNVDEETKESDEEEEKKYTCNKCNKKFTSAESQKKHKCRYKCLICGKHFPSIKILLKHLSRHAALVCDICQKRFKKSGDLKRHKMLHNNDRPFPCSDCSKRFIRFRDLSIHRAVHTGEHMFKCDECPKSFTQASNLKTHKLIHTGIKAFECDECHKRFRQLGVLKAHKLTHSGERPHQCEICLKRFKQLSTKTKHLLVHTGERKFKCDKCELMFKRFTNLKRHQLVHQDLKQFKCEECGKEFKRLSSLKTHQLTHTGEKPLKCDLCMKSFAHPTSLKSHKMIHSGERPHQCDLCDKRFTQSSNLKRHRKRHDNPNYGIRGMVFSPDELGIPMPVITPRSVPTEEIYAAVGIVPPASVLPLNVSKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -