Mlon011716.1
Basic Information
- Insect
- Mystacides longicornis
- Gene Symbol
- -
- Assembly
- GCA_963576905.1
- Location
- OY756424.1:33968679-33972946[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0026 0.26 13.0 0.1 2 21 143 162 142 163 0.93 2 17 0.0001 0.01 17.4 1.6 3 23 204 224 202 224 0.96 3 17 0.0033 0.34 12.7 3.8 1 20 228 247 228 249 0.94 4 17 4.2e-06 0.00043 21.8 0.8 2 23 256 277 255 277 0.95 5 17 6.7e-05 0.0068 18.0 0.4 3 23 285 305 283 305 0.96 6 17 0.00039 0.039 15.6 0.4 2 23 314 335 313 335 0.97 7 17 1.8e-06 0.00018 23.0 1.1 1 23 342 364 342 364 0.98 8 17 8.8e-05 0.0089 17.7 1.2 1 20 370 389 370 392 0.94 9 17 6.9e-05 0.007 18.0 0.5 1 23 398 420 398 420 0.98 10 17 0.00023 0.023 16.4 1.5 5 23 429 447 426 447 0.95 11 17 5.7e-05 0.0057 18.3 0.1 1 23 453 475 453 475 0.98 12 17 2e-05 0.002 19.7 0.6 1 23 481 503 481 503 0.98 13 17 2.3e-08 2.3e-06 28.9 0.4 1 23 509 531 509 531 0.96 14 17 1e-05 0.001 20.6 2.6 1 23 537 559 537 559 0.98 15 17 0.0061 0.62 11.9 1.2 1 23 565 587 565 587 0.98 16 17 0.082 8.4 8.3 0.2 1 23 593 615 593 615 0.93 17 17 0.032 3.2 9.6 0.7 1 23 621 643 621 643 0.97
Sequence Information
- Coding Sequence
- ATGCTTGGGAACAAATACTACCCTAAAAATGATCCCTACATCCCCAGAAGAAGACTTTCTGATAGAACTAATGACTTCTTCCAAGaTGTTAAAAGTCATACAGAAAATAGTAAATATTACGACAACGAAGTGACATCCAACTGTGTTGCATTTGTTCGTGATAATTATGCCACACTGAAGAACTTTTCAACTGAgatgaatattaaaaagtattCCGATGTAGAGCCTTCTCCAAAGTCAGAAGTTGAGGACGAATCGATATTTGAAGATTATGAATTTGATGATAATCCTGACAACAATAGTTCATTCAATGTATTGATAGTTGGTAATATGGATGTGGAGCAACCCAACACGCAGGACTCAAACAACCCTAATCACACTAGTCACATCAAAGTGGAAGACTTAGATTCTGAAGCTTTCGATATTGTGTGTAAATATTGCAAGAGTGTTTTTGCATCGGAGGATGATCTGTTGAGACATGTCAAGTCATGTGACGTGAGGaagttaaagaaaaaaagaaaacaaaaagccATTGCATCAAATGACACAGAGGTGGATGTGTCAATAGGAGCATCCAGTttaaagaagagaaaaaaaaaatatcttgcgTGTAATATATgctttaaaaaattcaaaaattatacGCAACTTGAAAAACATACCGCTAAGCATTCCAAAAAATATCACTGTGAAGATTGTGGCAAACATTTTAAAAGTGTAAGACTCCTGAGATTGCACAAATGTGCTGATGATCAAAAACCAGTTGTATGTCCTACTTGCGGtcgttgtttttcttcttcttcatatttaaaaattcatgAAACTGTTCATTCAGGGAAAAATCCTTCCCACTGCGTGGAATGTGAGGCCGTGTTTAAGACCCCGGGAGGTTTGAAGGCTCACATGAAAAAGCACGACTATAATGCTGAGAAACACCTCATGTGTGAGCAATGTAACGTCAAGTTTGAAAATGAAAACCAATTGCAAGACCACTTGCAGACCCACAAGTCAGACGAGGGTTTGTATAAATGTGACATTTGTGAGAAAGTATTCCAACATCCCAGTTATCTCCGGCGCCACGCATTGGTACATTCTACagttaaaaatttcaagtgcGACGTATGCCCAAAAAAGTTTAAGCGTGAAACTGAACTGAAATCACATAAATGGATCCACACAGACAAACGACCTTATGTTTGCGAGGAGTGCGGTTTGTCATTTCAATATGAATCCTATTTACGTTTACATAAAATGTCACACACTGGAGAGAAACCACATGTATGTGAATGCGGAAAAGCCTTCAAAACAACATCTAACCTGAATGCACACAAAATTAGACACACGGGACTGAAGATGTTCAAATGTGAAGTTTGTGGTAAGGGCATCAAAAGTGCTGGGCAGCTAAAAGAGCATCTTCTAATTCACACGGGGGAGCGTCCATTTAAGTGTTCCTCATGTCCTAAAGCATTCAGGAGAGCCGTCACTTTGAGGATTCACAACCGAATACACACCGGTGAAAAACCGTTCCTTTGCAAGGAATGTGGTCGACCCTTCCGGCGACAGGGAGAACTCCAAGCTCACATGAGAACCCATACTGGAGAAAGACCATATAATTGTGATGTGTGTGGCAAGTGTTTTGCCAGTAACGGAACATTCTTATCCCATAAACGCACAcacagtggagaaaaaccatttGTCTGTATGATATGTTGCAAGGGATTTACCGGAGCTAgttatttaaagatacatacaAAGATTCATACTGGTGAAAAGGACCATGCGTGTCCAGTGTGTCAATACCGGTGTGTCAGTGGGGCGGCTCTTCGAGCTCATGCCGTAGTTCATTCCAGCCAAAGACCTTATGCTTGTGAAGCCTGTCCTTACAGGGGTGCCACCCTGAAGCATTTGAGAAATCACAAGCTCACTCATGAAAGAAATTCATATACTTGA
- Protein Sequence
- MLGNKYYPKNDPYIPRRRLSDRTNDFFQDVKSHTENSKYYDNEVTSNCVAFVRDNYATLKNFSTEMNIKKYSDVEPSPKSEVEDESIFEDYEFDDNPDNNSSFNVLIVGNMDVEQPNTQDSNNPNHTSHIKVEDLDSEAFDIVCKYCKSVFASEDDLLRHVKSCDVRKLKKKRKQKAIASNDTEVDVSIGASSLKKRKKKYLACNICFKKFKNYTQLEKHTAKHSKKYHCEDCGKHFKSVRLLRLHKCADDQKPVVCPTCGRCFSSSSYLKIHETVHSGKNPSHCVECEAVFKTPGGLKAHMKKHDYNAEKHLMCEQCNVKFENENQLQDHLQTHKSDEGLYKCDICEKVFQHPSYLRRHALVHSTVKNFKCDVCPKKFKRETELKSHKWIHTDKRPYVCEECGLSFQYESYLRLHKMSHTGEKPHVCECGKAFKTTSNLNAHKIRHTGLKMFKCEVCGKGIKSAGQLKEHLLIHTGERPFKCSSCPKAFRRAVTLRIHNRIHTGEKPFLCKECGRPFRRQGELQAHMRTHTGERPYNCDVCGKCFASNGTFLSHKRTHSGEKPFVCMICCKGFTGASYLKIHTKIHTGEKDHACPVCQYRCVSGAALRAHAVVHSSQRPYACEACPYRGATLKHLRNHKLTHERNSYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -