Basic Information

Insect: Mystacides longicornis
Gene Symbol: -
Assembly: GCA_963576905.1
Location: OY756425.1:34961077-34967698[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 7.2e-05 0.0073 17.9 6.7 1 23 61 83 61 83 0.97

2 17 3e-05 0.003 19.1 5.3 1 23 89 111 89 111 0.97

3 17 4.4e-07 4.4e-05 24.9 3.0 1 23 117 139 117 139 0.98

4 17 3.9e-06 0.00039 21.9 6.4 1 23 145 167 145 167 0.98

5 17 3.1e-07 3.1e-05 25.4 6.7 1 23 173 195 173 195 0.98

6 17 5.2e-07 5.3e-05 24.7 4.8 1 23 201 223 201 223 0.98

7 17 1.9e-05 0.0019 19.8 4.2 1 23 229 251 229 251 0.98

8 17 1.3e-06 0.00013 23.5 3.0 1 23 257 279 257 279 0.98

9 17 1.2e-06 0.00012 23.5 4.8 1 23 285 307 285 307 0.98

10 17 6.9e-08 7e-06 27.4 4.1 1 23 313 335 313 335 0.99

11 17 4.6e-07 4.6e-05 24.9 5.6 1 23 341 363 341 363 0.98

12 17 5.6e-06 0.00057 21.4 2.6 1 23 369 391 369 391 0.94

13 17 1.7e-05 0.0017 19.9 7.6 1 23 397 419 397 419 0.98

14 17 8.6e-05 0.0087 17.7 6.8 1 23 425 448 425 448 0.95

15 17 9.6e-05 0.0097 17.6 0.3 1 23 454 476 454 476 0.97

16 17 0.035 3.6 9.5 3.7 1 23 486 508 486 508 0.98

17 17 1.9e-05 0.0019 19.8 2.5 1 23 514 536 514 536 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	7.2e-05	0.0073	17.9	6.7	1	23	61	83	61	83	0.97
2	17	3e-05	0.003	19.1	5.3	1	23	89	111	89	111	0.97
3	17	4.4e-07	4.4e-05	24.9	3.0	1	23	117	139	117	139	0.98
4	17	3.9e-06	0.00039	21.9	6.4	1	23	145	167	145	167	0.98
5	17	3.1e-07	3.1e-05	25.4	6.7	1	23	173	195	173	195	0.98
6	17	5.2e-07	5.3e-05	24.7	4.8	1	23	201	223	201	223	0.98
7	17	1.9e-05	0.0019	19.8	4.2	1	23	229	251	229	251	0.98
8	17	1.3e-06	0.00013	23.5	3.0	1	23	257	279	257	279	0.98
9	17	1.2e-06	0.00012	23.5	4.8	1	23	285	307	285	307	0.98
10	17	6.9e-08	7e-06	27.4	4.1	1	23	313	335	313	335	0.99
11	17	4.6e-07	4.6e-05	24.9	5.6	1	23	341	363	341	363	0.98
12	17	5.6e-06	0.00057	21.4	2.6	1	23	369	391	369	391	0.94
13	17	1.7e-05	0.0017	19.9	7.6	1	23	397	419	397	419	0.98
14	17	8.6e-05	0.0087	17.7	6.8	1	23	425	448	425	448	0.95
15	17	9.6e-05	0.0097	17.6	0.3	1	23	454	476	454	476	0.97
16	17	0.035	3.6	9.5	3.7	1	23	486	508	486	508	0.98
17	17	1.9e-05	0.0019	19.8	2.5	1	23	514	536	514	536	0.98

Sequence Information

Coding Sequence: ATGGATGCCCCTGATATGAAGCCAATACCAATGGCTTTAACAATGGCAGTGGGTATGGGGGCATCCCTCACCTTCACTCTGGTGGACACGGCTGATCTGCCATCTGAGTTTCTTCCCATACCCAAGGTTCCCACTGTCCCTACAGCCATCACCACCACCACTGGAAAAAGAGAAACGCCTCACAGATGTGACTTCTGCAGCAAGACTTTCACCAGGAAGGAGCATCTGCTGAACCACGTCAGGCAGCACACGGGGGAGTCCCCGCACAGATGTGCCTATTGCTCTAAATCCTTCACACGCAGGGAGCATCTGGTCAACCATGTCCGCCAGCACACCGGGGAGACTCCCTTCCGATGTACCTACTGCCCAAAAGCTTTCACCAGGAAAGATCATCTTGTAAATCATGTGAGGCAGCACACGGGAGAGTCCCCACACAAGTGCTCCATCTGCTCCAAGAGCTTCACCAGGAAGGAGCATCTCACCAACCACGTCAGACAGCACACGGGGGAGTCCCCACATAGGTGCAGCTACTGCAACAAGTCCTTCACTAGGAAGGAACATCTCACTAACCATATCAGGATTCACACGGGAGAGATGCCCTTCAACTGCACCTACTGCACCAAGGCCTTCAGCAGGAAGGAGCACCTCACCAACCACATCAGGAGACACACTGGGGAGACACCCTACGCTTGCACCTTCTGCTCTAAGTCCTTTGGCAGAAAGGAACACCTCACATACCACATCAGGAAACACACGGGTGAGACTCCGTACAGTTGTACGTATTGCACCAAAGCCTTTGCCAGGAAGGAGCATCTGAACATCCACGTGAGGAAGCACACGGGAGAGATGCCCTTCTCCTGCACCTACTGCACCAAGGCCTTCAGCCGGAAGGAGCATCTCAACAACCATGTCAGGAAACACACCGGGGAGACTCCTTTCCGCTGCACTTACTGTCCTAAGTCTTTTGCCAGGAAGGAGCATTTGACCAATCACATTAGGAAGCACACGGGTGAGACGCCCTACAGCTGCACCTACTGCCAGAAGTCCTTCAGCAGGAAGGAGCACCTCAACAACCATGTTAGGAAACACACCGGGGAGTCCCCGTACGCTTGCATCTACTGCTCCAAGTCCTTCACCAGGAAGGAACATCTCACCAATCACATCAGGGTTCACACTGGAGAATCTCCACATCGTTGTGAATTTTGTCAAAAGACTTTCACCCGGAAGGAGCACCTGAACAACCATCTCCGCCAGCACACGGGAGACACACCACACTGCTGCAACGTCTGCTCTAAGCCATTCACCAGGAAGGAGCATCTCATCAACCACATGAGCCGTTCGCACACGGGGGAGAGGCCTTTCGCTTGTGAAGAATGCGGCAAGACTTTTCCACTCAAAGGGAATCTTCTATTCCATCAACGTTCGCATAATAAAGGTGCGCAAGTCAATAGGCCCTTCAAATGTGATCTCTGCCCCAAGGACTTTATGTGCAAAGGGCATCTGGTCTCACACAGGAGGGCCCACACGGGAGAGAAGCCACACACGTGCGAGCAGTGCGGGAAGACGTTTGTGGAGAAGGGCTATATGCTGAGACACTTGAGGAAGCACGAGCAGGAAGCTGCCGTGGCCTCTGCCCAGCAGGGGGCCAGTGAGGTGGTTGTGGTGGTGGAGGGCAGCGGCCCCACCCCCAATGCCTCCGGAGGGGATGTGGTGCAGCAACAAGCCCAGCAACTTATCCACCTGACAGCTACACAGCAGCAGCCCATAAAGAATGAACTGATGCACCTGGCAGGCCAGCAGCAGCCCATCAAAGCGGAGCTGATGCATCTCAACCCGCAGCAGCAGCCTATCAAGGCGGAGACATATGTGATGTCTGAGACGGGGGGCAGGTCGGTGTTGCATCACCACCAGGACGTGGCCCAGCAGCAAGCCATGCCCCACCACCCCGTGGTAGTCAACTACTGA
Protein Sequence: MDAPDMKPIPMALTMAVGMGASLTFTLVDTADLPSEFLPIPKVPTVPTAITTTTGKRETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAYCSKSFTRREHLVNHVRQHTGETPFRCTYCPKAFTRKDHLVNHVRQHTGESPHKCSICSKSFTRKEHLTNHVRQHTGESPHRCSYCNKSFTRKEHLTNHIRIHTGEMPFNCTYCTKAFSRKEHLTNHIRRHTGETPYACTFCSKSFGRKEHLTYHIRKHTGETPYSCTYCTKAFARKEHLNIHVRKHTGEMPFSCTYCTKAFSRKEHLNNHVRKHTGETPFRCTYCPKSFARKEHLTNHIRKHTGETPYSCTYCQKSFSRKEHLNNHVRKHTGESPYACIYCSKSFTRKEHLTNHIRVHTGESPHRCEFCQKTFTRKEHLNNHLRQHTGDTPHCCNVCSKPFTRKEHLINHMSRSHTGERPFACEECGKTFPLKGNLLFHQRSHNKGAQVNRPFKCDLCPKDFMCKGHLVSHRRAHTGEKPHTCEQCGKTFVEKGYMLRHLRKHEQEAAVASAQQGASEVVVVVEGSGPTPNASGGDVVQQQAQQLIHLTATQQQPIKNELMHLAGQQQPIKAELMHLNPQQQPIKAETYVMSETGGRSVLHHHQDVAQQQAMPHHPVVVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -