Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0012 4.1 8.8 2.0 12 38 40 63 35 68 0.79

2 8 0.0079 27 6.1 5.0 5 41 62 94 58 96 0.81

3 8 0.00093 3.2 9.1 0.2 18 41 102 122 97 124 0.86

4 8 0.0023 7.9 7.8 1.3 18 29 130 141 125 152 0.77

5 8 3.2e-05 0.11 13.8 2.4 16 40 156 177 147 180 0.82

6 8 0.075 2.5e+02 3.0 0.8 18 27 186 195 178 203 0.83

7 8 0.012 40 5.6 0.5 14 28 210 224 198 235 0.76

8 8 0.021 71 4.8 0.2 17 41 241 262 229 264 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0012	4.1	8.8	2.0	12	38	40	63	35	68	0.79
2	8	0.0079	27	6.1	5.0	5	41	62	94	58	96	0.81
3	8	0.00093	3.2	9.1	0.2	18	41	102	122	97	124	0.86
4	8	0.0023	7.9	7.8	1.3	18	29	130	141	125	152	0.77
5	8	3.2e-05	0.11	13.8	2.4	16	40	156	177	147	180	0.82
6	8	0.075	2.5e+02	3.0	0.8	18	27	186	195	178	203	0.83
7	8	0.012	40	5.6	0.5	14	28	210	224	198	235	0.76
8	8	0.021	71	4.8	0.2	17	41	241	262	229	264	0.82

Coding Sequence: ATGAACTTGAAGATGGAAATTGAACAAAAAGTTAATGAGGAAAGTTACAAAGAGCCATTGATTGTGGTCGAGAAAGAATCAAATGTTGTTGCACTCGAAGAGTTTGATCATACACGAACTGGAGAAAAGTCGTTTACCTGTCAAATTTGTAGAAAAACATTCACTCGATTCAGTACACTTAAAGAACATAACAGGATACATACTGGAGAGAAACCTTTTAAATGTCATTGTTGCGATAAACAGTTTACAAAGTCGTATGGTTTGAAATCACACCTTAGAACTCATACGGGAGATAAACCATTCAACTgtgatatttgtaataaaaagttttctgTGTCAAATAGTTTGATATTACATCTTCGAACTCATtctggagaaaaaccatattcctgtaaaatttgtaacaaaaaattTACCCGTTCGGATTACTTGACTCTTCATGTGCGTACTCATACTGGCGAGAAACCTTACAATTGTAATATTTGTggtaaaaagtttaatcaatccaCTAGACTGAAGTCGCATATCCGTGCTCACACTGGTGAGAAACCGTTTAACTGTAACGTTTGCAAGAAAACTTTTACTGAATTGAAAAGTTTGAAACTACATCGTCGATTACATACTggggaaaaaccatacgaatgcaatgtttgtgGAAGAAAGTTCAGCCAGTTTAATGGATTAAAATTACATAGTCGTACGCATACTGGAGAGAAACCGTATGATTGTAAAGTTTGCGATAGAAAATTCACTCGTCCGGATCAATTGAAAAATCATCTTCGTTCTCACActgaagataaacaaaaaagatCGAATTCCCGTAGAAAAAAGTCAACTCCATCCAAGGTACCCACCATACAAATTCAGAGTGAAGATGCATCATCTGATCTTAGTGATTGGGCTGAACAAAACAGTAAAGATGAGAGTTCCAATCAAGTAACTCCATTCACAGTTGGGGCTCAACTCAAAATCGAATATAGTCCAGAGACTGAATAA
Protein Sequence: MNLKMEIEQKVNEESYKEPLIVVEKESNVVALEEFDHTRTGEKSFTCQICRKTFTRFSTLKEHNRIHTGEKPFKCHCCDKQFTKSYGLKSHLRTHTGDKPFNCDICNKKFSVSNSLILHLRTHSGEKPYSCKICNKKFTRSDYLTLHVRTHTGEKPYNCNICGKKFNQSTRLKSHIRAHTGEKPFNCNVCKKTFTELKSLKLHRRLHTGEKPYECNVCGRKFSQFNGLKLHSRTHTGEKPYDCKVCDRKFTRPDQLKNHLRSHTEDKQKRSNSRRKKSTPSKVPTIQIQSEDASSDLSDWAEQNSKDESSNQVTPFTVGAQLKIEYSPETE

Sequence clustering based on sequence similarity using MMseqs2