Basic Information

Gene Symbol
stc
Assembly
GCA_958510865.1
Location
OY294057.1:72709024-72724194[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2 4.3e+04 -4.8 3.4 6 10 387 391 384 391 0.69
2 15 0.12 2.6e+03 -0.2 0.2 4 10 417 423 416 424 0.94
3 15 1.5e-05 0.32 12.3 12.5 3 19 431 447 430 447 0.93
4 15 2 4.3e+04 -4.4 1.3 6 10 473 477 473 477 0.90
5 15 2.4e-09 5.2e-05 24.4 11.4 1 19 483 501 483 501 0.98
6 15 6.3e-11 1.4e-06 29.5 13.0 1 19 541 559 541 559 0.98
7 15 1.4 3e+04 -3.6 1.1 1 4 570 573 570 573 0.97
8 15 8.2e-09 0.00018 22.7 12.5 1 18 599 620 599 621 0.89
9 15 0.96 2.1e+04 -3.1 1.6 5 10 648 653 648 653 0.93
10 15 0.029 6.4e+02 1.7 12.2 1 11 659 669 659 681 0.90
11 15 1.4e-09 3e-05 25.2 12.1 1 18 686 703 686 704 0.99
12 15 0.67 1.4e+04 -2.6 1.0 5 10 732 737 732 737 0.92
13 15 0.0003 6.5 8.1 14.6 1 19 743 760 743 760 0.91
14 15 6.2e-08 0.0013 19.9 12.3 1 19 796 815 796 815 0.97
15 15 0.0041 88 4.5 15.7 1 18 825 843 825 844 0.90

Sequence Information

Coding Sequence
ATGTCGTATCCTACTGACCAGCAAGCCACTGGCTTTATTAACGGGCTAGTTAATCAAAATTCTGTTGGTGAGCAGGTTAATGCAATGGTTAGAGAAACGGGTGGTTCTAGTGAAAGTGGTATTAATGTTCCATCTGGAACAGGAGCTATAAGGAAGTCTAATCGTGGGAACAATAAAAGTAATAGAGATAAATCCTTCAAAACTGAAAGAAGATTCAGGAATGGAGAACAAACACAAAATAACTGGAAGCcatttcaaattccaaaaaaaaattatcgaccccAGAATTTTTTCGTTGATGATGATAATGTACAATTCAATAATCCTGAATTATCTTgcgtcaaaaatacaaatcctaAAGACATCAATCACTATTCTCATAAGCAGTATAATTCTCATTATGACAATATAAATAGTTCTGGTGGTTTATATAGACAACAGAATTTGAATAGTGAGAGGAATTCACGACATTATTGGGAGGACACTTCTAGAGCGGATTCTTATGAATCAGTGTCTAACAGGAGTGGAAAATATAGGAACAGTAATTATATCCCACAAGAAAATGTGAATGAAGCCATGTCTAAAAGCAAAGAAAGGAGTTCAGTATATAACAGTGACGAAACATTGAAGGAAAATCATGATGTACCGAAGCTAAATAGAAATGGTAGATTCAATAGTTATGTAAGGAATTCTCGACATTATAATGATAATATATTCCAACATAATTCTGATATGCCAAGGTCAGATAGAAAATACAGaaacaattatgaaaagaatgcCCGATATTTTAATGCAGACATTCCACAAGAAAATTATGATGTATACAGAAATGATGGAATTGGGAATCGTaaaaatattggtaaaaatggatattttcatcagaaaaagctCAGATACAATGGTAAGGATTCAGTAAGCAATTATAGTAAAAAGATGGAGCGTAAGGGTGATGATAAATTAGctcaaatagCTTCTCAACGAGAAAGACTCGAAGATATGATCAAACGTAGAACTTTAGAATGTTTGGTATGTTGTGAATTATTGAAGCACAATGATCGAGTCTGGTCATGCAGACAATGTTATCATATCCTTCACCTGAAGTGTACTCAAGCTTGGGCAAAAACTtctaaaattgaaaatggtTGGCGATGCCCAGCTTGTCAAAATGTATGTAAAGAAATACCTGAAGATTATATATGCTTCTGTGGAAAATCAAAGAATCCTAGAAATGAACCAGGTTCCATCGCTCATTCTTGTGGAGAAATATGTTACAGAGAACGTCGCAACTGTGAGCATCGTTGCTTGATATTATGCCATCCAGGACCGTGTCCTGATTGCACTGTTCTTTCTGACAGGCCATGTGGTTGCGGTAAAACAAAACAGCAGGTTATATGTAGCTCTGATATAGAAATCCTTTGTGAAAATCCATGCGGCAGGTCCTTGGAGTGCGGCATTCATGAGTGTGCCGATAAATGTCACATGGGAGATTGCCAACCATGCAAGGATGTTCTAAAACAGTGCTGTTTTTGTGAGAAGGAAAATAGAGAAGTTACTTGCAGCTTTGAATATAAAGGGAGTCAGAGTTATAGTTGTGAGGGTACTTGCGGCAAGACTTTGAGTTGTGGAAATCATAAATgtgaggaaatttgtcatagtGGAGCTTGTAAACCTTGTAGCACAGATTGTAGTTTGATAAGAACGTGCTTCTGTGGAAGACATTTGTTAGAAGTTCCTAGGACAAGCTGTTTGGATCCCATTCCCTCATGTGGCTCGCTGTGCCAAAAGGCTCTTAAATGTGGGCCTAATAATGCTCGCCATAAATGTGAATCAATTTGTCATGATGGAAATTGTCCACCTTGTGGTCTTACCACAGTTTTGAAATGCAGATGTGGCTCAGTAGACAAGGAAATACCTTGTCAAAAGATGATAGACGATGATGCTAGATGTGAAAGAAAATGCACTAAGAAACGATTATGCGGCAAGCACAAGTGCAACCAACGTTGTTGTATCGAGATCGAACACATCTGCCCGCTTCCTTGCAACCGGACACTTTCTTGCGGCAATCATAGATGTGAAATGACCTGTCATAGCGGTAGATGTAAACCATGCATAGAAACCAGTTTCGAAGAACTTTATTGCGATTGTGGTTCGATGGTTATGTACCCTCCCATACCATGTGGAACAAAGCCGCCGACCTGTGACAAACCGTGTTCGAGGCCTAGAGAATGCGGTCATGAAGTTAACCATACTTGTCATACGGGACCTTGTCCCCCGTGTACCGTTCTGTGTACAAGATGGTGCTATGGGAATCACGAGCAGAGACGTACCATACCTTGCCATCAAGATGATTTCAGTTGTGGATTGCCGTGCGGAAAGAAAATGTCTTGTGGAAGGCATAAGTGTATAAGTCCTTGTCATTTAGGAGTTTGTCCTGTGCCTTGCAAGCAGCCTTGCTTAACTGAACGTTCATCATGTGGGCATCCATGTAACGCCCCATGCCATGAGCCACCTTGTCCACAAACCAATTGCAAGGGTAGAGTTGCGGTTTCTTGTATTTGTGGTTATCTGAAGGGTGTTCGAACTTGCAACGAGGTGATTAACGAGATCAGAAATATGGAGTTGGCCATGTTGAGCGAAAAGATGCTGAATATGTCGAAAAATCAATCTGTGGACATCAGTGATATGAGCAAGTTAAAAAGACCCGATATTCTGAAGATCTTAGAGTGCACAGAGGAATGCCGCGTCATTGAAAGGAACCGAAGGTTAGCCATAGGTTTACAAATCCGCAATCCCGATATCAGCCAAAAACTGACACCACGATATTCAGATTTCATGAGAGGATGGGCCAAGAAAGATCCTCACTTTTGCCAAAAAGTTCATAATAAACTAACGGAGCTGGTGCAGTTAGCTAAACAGAGTCAACAAAAATGTCGCTCCCATTCCTTCGAATCGATGAACAGGGATAAACGTCACTTCATTCATGAATACTGCGAGCATTTCGGTTGCGAGAGTGCAGCCTACGATTCTGAACCGAACAGGAATATTGTGGCTACGGCTATCAGGGATAAATCATGGTTGCCCAGCATGAGTCTTTTGGAGGTTATTCAGAGGGAAAATGGCCAGAGGAAGGTGCCGATGCCTACTCATTTGGAGAGAAATTTATGCTCTAAATCAGAAAGTGTAGCTTTGAAATCCCTTAGTAGAACTGTTAAGTTGGGAGTACAGGTTAATGAtgagtattcaaaaaaataa
Protein Sequence
MSYPTDQQATGFINGLVNQNSVGEQVNAMVRETGGSSESGINVPSGTGAIRKSNRGNNKSNRDKSFKTERRFRNGEQTQNNWKPFQIPKKNYRPQNFFVDDDNVQFNNPELSCVKNTNPKDINHYSHKQYNSHYDNINSSGGLYRQQNLNSERNSRHYWEDTSRADSYESVSNRSGKYRNSNYIPQENVNEAMSKSKERSSVYNSDETLKENHDVPKLNRNGRFNSYVRNSRHYNDNIFQHNSDMPRSDRKYRNNYEKNARYFNADIPQENYDVYRNDGIGNRKNIGKNGYFHQKKLRYNGKDSVSNYSKKMERKGDDKLAQIASQRERLEDMIKRRTLECLVCCELLKHNDRVWSCRQCYHILHLKCTQAWAKTSKIENGWRCPACQNVCKEIPEDYICFCGKSKNPRNEPGSIAHSCGEICYRERRNCEHRCLILCHPGPCPDCTVLSDRPCGCGKTKQQVICSSDIEILCENPCGRSLECGIHECADKCHMGDCQPCKDVLKQCCFCEKENREVTCSFEYKGSQSYSCEGTCGKTLSCGNHKCEEICHSGACKPCSTDCSLIRTCFCGRHLLEVPRTSCLDPIPSCGSLCQKALKCGPNNARHKCESICHDGNCPPCGLTTVLKCRCGSVDKEIPCQKMIDDDARCERKCTKKRLCGKHKCNQRCCIEIEHICPLPCNRTLSCGNHRCEMTCHSGRCKPCIETSFEELYCDCGSMVMYPPIPCGTKPPTCDKPCSRPRECGHEVNHTCHTGPCPPCTVLCTRWCYGNHEQRRTIPCHQDDFSCGLPCGKKMSCGRHKCISPCHLGVCPVPCKQPCLTERSSCGHPCNAPCHEPPCPQTNCKGRVAVSCICGYLKGVRTCNEVINEIRNMELAMLSEKMLNMSKNQSVDISDMSKLKRPDILKILECTEECRVIERNRRLAIGLQIRNPDISQKLTPRYSDFMRGWAKKDPHFCQKVHNKLTELVQLAKQSQQKCRSHSFESMNRDKRHFIHEYCEHFGCESAAYDSEPNRNIVATAIRDKSWLPSMSLLEVIQRENGQRKVPMPTHLERNLCSKSESVALKSLSRTVKLGVQVNDEYSKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-