Moct031587.1
Basic Information
- Insect
- Myrrha octodecimguttata
- Gene Symbol
- -
- Assembly
- GCA_958510865.1
- Location
- OY294062.1:54097914-54099844[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.081 13 7.7 0.3 6 20 12 26 8 28 0.95 2 15 0.041 6.7 8.6 0.2 2 21 34 53 33 54 0.94 3 15 0.48 78 5.2 1.8 1 23 98 118 98 118 0.90 4 15 0.0054 0.89 11.3 1.1 1 19 217 235 217 235 0.96 5 15 0.71 1.2e+02 4.7 6.2 2 23 244 266 244 266 0.95 6 15 0.012 2 10.2 1.7 3 23 278 298 276 298 0.97 7 15 0.048 7.9 8.4 1.3 1 23 328 349 328 349 0.84 8 15 7.4e-05 0.012 17.2 0.3 2 23 355 376 354 376 0.95 9 15 2.6 4.3e+02 2.9 0.6 2 21 385 404 384 405 0.81 10 15 0.00026 0.042 15.5 4.0 1 23 412 434 412 434 0.97 11 15 3.8e-06 0.00063 21.3 3.6 1 23 440 462 440 462 0.97 12 15 0.00014 0.023 16.4 4.8 1 23 468 490 468 490 0.97 13 15 1.7e-06 0.00028 22.4 0.8 1 23 496 518 496 518 0.99 14 15 4.1e-05 0.0067 18.0 0.6 1 23 522 544 522 544 0.98 15 15 0.00021 0.035 15.8 1.4 1 23 552 574 552 574 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTAAAAGTTTGAACTGCGTTTTTTGCTGTAATCAGACCTTTGATTCTCCTGAAACACTAAAAACTCACATTTTGGACGTATTAAATAAATTACAATGCCCTATCTGCAAAGAAAATTCTAGCgcatttgaaaatttcacgaaacaCTTAAAGGAATGTGAAGCAGTGAAACTTTGTGAAGTAAACGAATCCCAAATTACTAATGCAGAAAATTTAGTGGAAGAAAATAACAGGATTCTCATACAAGATGTTGTAAGTTCAGaagaaaacaaAGCAGCAAATCAGTATTATTGTGAAATTTGCGATGTTCACTTCGCAGAAATGAAGAAACACTTGAGGGAAAATCATATGGGTCAGCAAGTTGTTATAGAAAGTCAAAACCTAGATGAAATCTTAGAAGAATCAGAGGTAAATAACGAAGATGAACCAGAGGCAATAAATGACCCAAAACCAAAAATTAACCCCACAGAAACAGAACATATCTTCCTTGAACAAGAGATCCTAGATGATGATGGAACATTTTACACAAAGAAGCTAACAAAAATCAACATTATTCCAGATTACGAAAGAAGTCCACCACTTGTTGAAAAAGTACTTTATAGGAACAACTCCAATAATGCAAGTGGAACTACAATTATTGTGTATCATTGTAAAGATTGCGATATGAGATTTTCCCAGTTGGTTAGCTATAACGAACATGATTGCAATGTTAAAGGAGAAGAAGTATGCAAATtatgttcaattcaattttgtacAAAATTAGAATTATCCCAACATAAGAAAAATTGTCACAAAGATatatcatcaagaaaaaaaggtTCAATTTGTGATGTTTGCCATATTCAATTCAACTCTGAAAAGAGCATGATGCTTCATAAGAGAATGCATGCACCCATAAGAAACCAAAAAACAATTGACCCTCCTGCAACTTACAATATTAACGGCACAAAAGTTTCTGAGGAATCAAATGAAACATTCACGTGCGAAAAATGCGGTAGGGAATACAACAAACAATACGAGGAAGTCCATATGAAATCGCACATGGAGGAACTCCTAAACTGCTCAATTTGCAACCGGAAATTCTCAGATAAAGACGATTTAGGTCTGCATCTTCAGGCGCATGGAAACGtggtcgaaaaaaaaatgtcatgtAGATTCTGTAAGAAAACATTCTTGATCAGGAAATCTCTAGATGATCACATTAAAAATGACTGTGATGGAAGAAAACATTCCTGCAGTTTCTGTGGCAGAAGATTCTCAAAACCTCACGAGATGGTTAAGCACGAACGTATCCACACAGGGCTGAAACCGCACATCTGTCAGATTTGTGGTAAGGGTTTTCGGGTGAGCTACTGCCTAACGTTGCACATGAGAACCCATTCAGGTATACGACCATATCAATGCCAAATTTGTGACAAGAGATTCAAGTCACATGGAGCTTACACTCATCACAATCAAATTCATTCTGATGTACGTTCGTATCGTTGCCCCTTTTGTCCTAAATCTTTCAAGACCTCAGTTCAATTGGCGGGTCATAAGAACACACATACCAAACCATTTTCATGTAATGTTTGTAGCAGACCTTTTTCTTCATTATATGCTGTAAAGCAGCATATAAAATCTCATGAAAGCACAAATGAATTCAAACATCAGTGCCATATTTGTGGAGCAGAATATGCAAGGTACTTTGCATTGAGGGATCATCTAGATACTCATCCAGAATGTAAGAATGAAAACCTGGAACAGTTACCGAAAGAGGAAAAAAATAagcaagatgaaaaaaaaattaaaatgaaatcatttaatTCTCCTTGA
- Protein Sequence
- METKSLNCVFCCNQTFDSPETLKTHILDVLNKLQCPICKENSSAFENFTKHLKECEAVKLCEVNESQITNAENLVEENNRILIQDVVSSEENKAANQYYCEICDVHFAEMKKHLRENHMGQQVVIESQNLDEILEESEVNNEDEPEAINDPKPKINPTETEHIFLEQEILDDDGTFYTKKLTKINIIPDYERSPPLVEKVLYRNNSNNASGTTIIVYHCKDCDMRFSQLVSYNEHDCNVKGEEVCKLCSIQFCTKLELSQHKKNCHKDISSRKKGSICDVCHIQFNSEKSMMLHKRMHAPIRNQKTIDPPATYNINGTKVSEESNETFTCEKCGREYNKQYEEVHMKSHMEELLNCSICNRKFSDKDDLGLHLQAHGNVVEKKMSCRFCKKTFLIRKSLDDHIKNDCDGRKHSCSFCGRRFSKPHEMVKHERIHTGLKPHICQICGKGFRVSYCLTLHMRTHSGIRPYQCQICDKRFKSHGAYTHHNQIHSDVRSYRCPFCPKSFKTSVQLAGHKNTHTKPFSCNVCSRPFSSLYAVKQHIKSHESTNEFKHQCHICGAEYARYFALRDHLDTHPECKNENLEQLPKEEKNKQDEKKIKMKSFNSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -