Moct034954.1
Basic Information
- Insect
- Myrrha octodecimguttata
- Gene Symbol
- -
- Assembly
- GCA_958510865.1
- Location
- OY294064.1:2281637-2295515[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.8 1.3e+02 4.5 0.7 1 23 165 188 165 188 0.92 2 15 0.0021 0.35 12.6 0.8 1 23 194 217 194 217 0.93 3 15 0.0054 0.89 11.4 3.0 1 23 223 246 223 246 0.97 4 15 0.0064 1 11.1 1.3 1 23 252 275 252 275 0.95 5 15 0.0036 0.59 11.9 0.6 1 23 281 304 281 304 0.97 6 15 0.00056 0.092 14.5 0.5 1 23 310 333 310 333 0.96 7 15 0.00011 0.018 16.7 1.9 1 23 339 362 339 362 0.96 8 15 0.069 11 7.9 0.1 1 23 368 391 368 391 0.96 9 15 8.6e-05 0.014 17.0 0.7 1 23 399 422 399 422 0.97 10 15 0.00026 0.042 15.5 0.0 1 23 428 451 428 451 0.96 11 15 0.00026 0.042 15.5 0.4 1 23 456 479 456 479 0.96 12 15 0.0014 0.23 13.2 0.4 1 23 489 512 489 512 0.95 13 15 8.8e-05 0.014 17.0 4.3 1 23 518 541 518 541 0.96 14 15 0.00046 0.075 14.7 0.6 1 23 547 570 547 570 0.96 15 15 0.00015 0.025 16.2 0.3 1 23 576 599 576 599 0.94
Sequence Information
- Coding Sequence
- ATGGACGTCGACCAGGGCATTGCCGTCAAGGAAGAAAAACCTTTTTTGTCTGATTGCACTCTGAGTTTGGAGGATAACATCCAAGGGATAAAGCATGAAGCAGTGGACATGATCACTGGGGAATACTATTCAACTGAAGATAAACAAGATTCAGCTATGAAGTTCGAAGTTGTAAAGATTGAAGAACAATTCTTCGATGAAAGGGAAATTAATGATAGAGAAGCATTTTTTAATGAAGCCGTGAATAATCAGCTGAACGATGAAAAAAGTTTCCAACAAataactgataatttcaatattcaaaccGAGAATTCAGATGAGGTCAGCAGCTATCAAAACCGATTGTATGACAGTACGTCGATGTTCGAAGATAAAATGCAGGATGTTAGGATTGTTGCTGATCCTGAGCATGATAAACATTTGGGTAAACAAAATACAGTAAATAAAAACCACCGCGAACAGTTAAAATCTGCTCAAGGGAATATCCACAGACATCaatgtcatctttgtgaatttGGTGCTGCTTGGAAAGCTCTCCTAAAAAAGCATATCGAATCTGTTcattttaaaaacaaaaaatatcagtgtaaggagtgtgaatatgctacagctATTAAGGGGCATCTAAAAAAGCATACAGATTTGGTTCACATGAATATTCAAAAGCACCAGTGTGACACGTGCGAATATGTGTGCTACAAGGAGGAAACGCTCAAAACTCATATTGAAACTGTTCATTCGAACAACGAAAACCATCAGTGTCGCATATGTAACTTTTCTACAACTACGAAGATGTTACTCGCAGAGCATACCGAATCTATTCATTCCGAAACGGTTAAGTATCAGTGTGACAGTTGTGAATATATCTGTTACAAAAAGGAGGATCTAGAAATACATATCGAATCTGTTCACTCGAATACAAAAACATTTAACTGTCATGTATGTAACTTTGCTTCGAATAGAGAGTCGCTTCTAACAGctcatatagaatctgttcacctGAAAATCAGGAAACATCGTTGTGATGAATGTGACTTTGTTACCGGTAGGAAGGACCATCTGAAAAATCACATCGAAATGGTTCATTTGAacatcaaaaaatatcagtgtgatgaatgcgCATTCGCTACAGCTAAGGAGATGTATCTTAAATTACATATTGAATCTGTGCACTCAAATGTGGAAAGAACCAAACATCAGTGCAATGAATGTGACTATAACTCGGCTAGAAAGAGGGCTCTAAAAGTACATATTGAAACTGTTcacttgaaattaaaaaaatatccgtGTAATGAATGTGAATATACTGCAGGTAGACCTAGTGCTCTAAAAAAACATATTgactctgttcacttgaatatcaaacATCAGTGTTTTGAGTGCGACTATGTTACAGCTGCCAAGTCGGCATTGAAAAGGCATATTGAATCTGTTCACTTTGATATAAAAAGAAAccaaaaaagatttcaatgtAACGAATGTGAATACGCTCCAACTAGACAGACTTATCTGAGACGGCATATTGAGAATGTTCACTTGAAGGTCAGAAAACATAAATGTCATTATTGCGAGTTCACTTTTGCTATGAAGTCCGATCTAAAAACCCACATTGACCGTATTCACttaaaaaccaaaaactttCATTGCGATGAATGTGGACATGGTACGGCTGTTAAGGCCGATCTAAAAAGGCATATAGAGTCTGTTCACCAGAGTATTCCAAGGTATAAGTGTGATGAATGTGGATATGCTGCTAGTAGGAAGAACTATCTGAAAAGTCATGTTGAACAAGTTCACTTGAACACCATTACAAATTCAGTGTAA
- Protein Sequence
- MDVDQGIAVKEEKPFLSDCTLSLEDNIQGIKHEAVDMITGEYYSTEDKQDSAMKFEVVKIEEQFFDEREINDREAFFNEAVNNQLNDEKSFQQITDNFNIQTENSDEVSSYQNRLYDSTSMFEDKMQDVRIVADPEHDKHLGKQNTVNKNHREQLKSAQGNIHRHQCHLCEFGAAWKALLKKHIESVHFKNKKYQCKECEYATAIKGHLKKHTDLVHMNIQKHQCDTCEYVCYKEETLKTHIETVHSNNENHQCRICNFSTTTKMLLAEHTESIHSETVKYQCDSCEYICYKKEDLEIHIESVHSNTKTFNCHVCNFASNRESLLTAHIESVHLKIRKHRCDECDFVTGRKDHLKNHIEMVHLNIKKYQCDECAFATAKEMYLKLHIESVHSNVERTKHQCNECDYNSARKRALKVHIETVHLKLKKYPCNECEYTAGRPSALKKHIDSVHLNIKHQCFECDYVTAAKSALKRHIESVHFDIKRNQKRFQCNECEYAPTRQTYLRRHIENVHLKVRKHKCHYCEFTFAMKSDLKTHIDRIHLKTKNFHCDECGHGTAVKADLKRHIESVHQSIPRYKCDECGYAASRKNYLKSHVEQVHLNTITNSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01024290;
- 90% Identity
- iTF_01024290;
- 80% Identity
- -