Moct028122.1
Basic Information
- Insect
- Myrrha octodecimguttata
- Gene Symbol
- -
- Assembly
- GCA_958510865.1
- Location
- OY294061.1:56331107-56340004[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8 3e+02 3.4 3.9 1 23 61 83 61 84 0.93 2 14 0.0042 0.68 11.7 0.2 2 23 152 174 151 174 0.95 3 14 6.2e-05 0.01 17.5 0.4 2 23 183 204 182 204 0.97 4 14 4.5e-05 0.0073 17.9 1.6 2 23 207 228 206 228 0.97 5 14 0.00024 0.04 15.6 0.7 1 23 234 256 234 256 0.98 6 14 1.4e-05 0.0023 19.5 5.7 2 23 263 284 262 285 0.95 7 14 0.37 60 5.6 3.2 5 23 298 316 295 316 0.96 8 14 8.6e-06 0.0014 20.2 2.3 3 23 323 344 322 344 0.97 9 14 0.0028 0.46 12.3 0.0 2 23 360 380 359 380 0.97 10 14 6.8e-05 0.011 17.3 1.0 1 20 386 405 386 408 0.92 11 14 3.7e-05 0.0061 18.2 0.3 1 23 416 438 416 438 0.99 12 14 0.00063 0.1 14.3 5.8 1 23 444 466 444 466 0.98 13 14 1.4e-07 2.3e-05 25.8 3.8 1 23 472 494 472 494 0.98 14 14 0.00062 0.1 14.3 7.3 1 23 500 522 500 523 0.96
Sequence Information
- Coding Sequence
- ATGGGATCTCTCTTCTTAAATTCACTAAACTTGCACATATTCGCATCCGCAGTTAGTTCCGGTGCATCTTACGACCCCTTAGGCAGAGACGCATGGGAAGATTCAGACGTAGACTGCCCCCCTAACGAAGAAGAAAACGACTTACCTTCAGTTATCGGTTACACCCCACCAACCCTCAACTTCAAGTGTTCAAGTTGCGAAGAAGCGTTCTCCTGTCTACAAGATCGCAAGCAGCACATAATGGAGCACCATTCTGAGCAACAACAAAAGCAGAACCCGAACGTGATAGGGTCACTCATCGGGAAGAAAAAAGTAAAGAAACTCACTATAAAACCGAAAAGCGAGACAGAACAAAAATACGACACTGTCTTCACCAACAAGATAAAAGTTGAAAATGGGGAATGCAAGACTGAAGTGGACGAAGTCAAGCCGGACGATGCGGACTCTAGGACTGTCTGCGACCTGTGCAATACGGTTCTACCGGACCAGAAGTCCCTTAGAGATCATAGGATCAAGGTGCACAAGATCCCGGACAAGGCCCGTTTGAAATGTTCGACTTGCGACGAAGTGTTTGCCAATGAATACAAGTTTACGGAGCATTTGAAGGTGCACCCTTTGGAGTGCAAGATGTGCGGGAAATTGTTCTACAGGAGGCAGAATATACAGTTGCATATGAAGAGACACCTGGGTATCAAACCGTTCAAGTGCGATATTTGCGAGAAGGCGTTTTTGACCAAGCAGAAGTTAGAGGAGCATAGGAATGTTCACACAGGCCACGCCCCAATCAAATGCAATCTCTGTAATGAGACGTTCCGAAGACATTCCAATTTGATCCAACATCGAAACAGACATCACTTGAAGAATAAGAAGAAGCTGAAGGACTACGTATGTCATTGCGGGGAGTACTTCCATTCTAGGAAGAAACTGGCATGGCACAAAGAGACCCACGATGTTAAACCGAAGGCGTGTACCATGTGCAATGAGAAGTTTGTGCATATGTCAAGTTTGACCAGACACATGAGGAAGGCTCATAACGAGAGGTTTTTACCGACGCAGGAGAGGAACAGCGAGAACGTTGAGTGTCCTGTATGCAAAGGGGTGTTCGTGAAGTCTTCGTTGGACGTCCACATGCGCGTACACACCGGTGCCAAACCTTACTCCTGCCTCATATGCAACAAGGAATTCAGCACCAGGTGGAACCTGAAGTTGCACAAATGGACCCACGCCTCGAGGGTATCCAAGCCCTTCAAATGCGACCAGTGCAATGGGGCCTTCGTCAGAGAATCTGACTACATTTCTCACATGAACTCCCACAAGAGTATCAAACCGTACACTTGTAATCACTGCGGGGCCCGGTTCATACGTAAATACAACTGCCAGCGACATGTTAAAGAGCACGAGAGTGTGAAGAACTTCAGTTGCACGATTTGCGGTAAGACTTTCCATAGGTCCTACTACCTCAAGGACCACATGAGGGTGCACAGCGGGCTGAGACCTTTTACCTGTCATATTTGCGGTAAGACTTCTACAACTAAATCCAACCATAACAAGCACGTGCAGATTCATCATCCTAGGTCGCCTGTGACCACTGAGAATTAG
- Protein Sequence
- MGSLFLNSLNLHIFASAVSSGASYDPLGRDAWEDSDVDCPPNEEENDLPSVIGYTPPTLNFKCSSCEEAFSCLQDRKQHIMEHHSEQQQKQNPNVIGSLIGKKKVKKLTIKPKSETEQKYDTVFTNKIKVENGECKTEVDEVKPDDADSRTVCDLCNTVLPDQKSLRDHRIKVHKIPDKARLKCSTCDEVFANEYKFTEHLKVHPLECKMCGKLFYRRQNIQLHMKRHLGIKPFKCDICEKAFLTKQKLEEHRNVHTGHAPIKCNLCNETFRRHSNLIQHRNRHHLKNKKKLKDYVCHCGEYFHSRKKLAWHKETHDVKPKACTMCNEKFVHMSSLTRHMRKAHNERFLPTQERNSENVECPVCKGVFVKSSLDVHMRVHTGAKPYSCLICNKEFSTRWNLKLHKWTHASRVSKPFKCDQCNGAFVRESDYISHMNSHKSIKPYTCNHCGARFIRKYNCQRHVKEHESVKNFSCTICGKTFHRSYYLKDHMRVHSGLRPFTCHICGKTSTTKSNHNKHVQIHHPRSPVTTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -