Moct035769.1
Basic Information
- Insect
- Myrrha octodecimguttata
- Gene Symbol
- -
- Assembly
- GCA_958510865.1
- Location
- OY294064.1:10294037-10295842[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.17 27 6.7 2.7 1 23 92 115 92 115 0.95 2 18 0.0066 1.1 11.1 0.6 3 23 123 144 118 144 0.94 3 18 0.0037 0.61 11.9 1.8 1 23 150 173 150 173 0.97 4 18 2.5e-05 0.0042 18.7 0.6 1 23 179 202 179 202 0.98 5 18 0.034 5.6 8.8 1.0 1 20 208 227 208 229 0.95 6 18 0.00061 0.1 14.3 0.1 1 23 234 257 234 257 0.94 7 18 8.8e-05 0.015 17.0 3.2 1 23 262 285 262 285 0.97 8 18 9.6e-06 0.0016 20.0 0.1 1 23 291 314 291 314 0.96 9 18 0.00046 0.075 14.7 5.3 1 23 319 342 319 342 0.93 10 18 0.0021 0.35 12.6 0.1 1 23 348 371 348 371 0.97 11 18 0.0044 0.72 11.6 5.4 1 23 376 399 376 399 0.96 12 18 0.013 2.2 10.1 0.1 1 20 405 424 405 425 0.97 13 18 0.00094 0.15 13.7 0.0 1 23 434 457 434 457 0.97 14 18 0.00051 0.084 14.6 0.5 1 23 463 486 463 486 0.97 15 18 0.0012 0.21 13.4 1.5 3 23 493 514 491 514 0.94 16 18 0.025 4.2 9.2 0.1 1 23 520 543 520 543 0.94 17 18 0.016 2.6 9.9 1.1 1 20 549 568 549 569 0.96 18 18 0.024 3.9 9.3 0.5 2 23 579 601 578 601 0.95
Sequence Information
- Coding Sequence
- ATGGACATATGTGGCGACGATacatcagaaaaaaacaaccatCCAACTGTGAAGCTTGAAGATGTAAAGATTGAAGAACAATTCACCGATGAAAAGGGCATCCATCccagagaaacatttttttatgaaacgGAGAATAATCCAAGGAAACATGTTAGTGGCAAAATGAAAGGGGTGACCCAAAATGGAAGAATTGACCTCAATTCTCAAGCATGTAATTCAGAAGTTGAAAAGCTGGATCATTTGGAAGACATCCATTCTGAACAGAAGAAGCATAAATGTCACTTTTGTGAATTTGATTCAGCAAGAAGAATCAGTCTCAACCaacatgtagaatctgttcactcaaatatgaaaaaacatCTGTGCaatgaatgtgaatttgctgCATCTACCAAGCAGAATCTGAAAGCccatgtagaatctgttcatttgaatatgagaAAGCATAAGTGTAATGAGTGTGAATATTCGTCAAATTGGAAGTCTCTTCTCAGGGATCATATGAAATCGGTTCACATGaccatcaagaaatatcagtgtgacgAATGTAAATATGCCACAGCAGTGAAGGCGCATCTTAAGAGGCATATAGAAACTGTTCActtgaacatcaagaaatatcagtgttgTGATTGTGAATATGCTTCAGCAGAAAAGAGCGGCCTGAAAAATCATGTTCACTTGAatgtcaaaaaatatcagtgtgaagAATGTGAATATGTTACAGCAATAAGTTACAATCTCAAAAGACATGTGGTATCCGTTCACTCGAATATAAGacatcagtgtcatctttgcGAATATGTTGGTACCCAAAAGAATAATCTCAAGAGGCATATAAACTCTGTTCACTTGAACATCAAGAACTATCAGTGTGGCGAGTGTGGATATGCTTCAGCACAAAAGAGTAATCTTAGAAATCATGTTGAATCTGCTCACTTGAATATAAGacatcagtgtcatctttgtgaacatTCTTTCACTCAAGAGATGCAGCTCAAGAGGCATATAGAGTTTGTTCACTTaaacatcaagaaatatcagtgtagTGAATGCGAGTATGCTTCAGCAGAAAATAGGGGTCTGAAAGTCCATATGGAATCTGTTCACTTAAATATTAGACACCAGTGTCATTTTTGTGAACATGTTACAAATCAAAAGGTGAGTCTCAAGAAGCATATTGAATCTGTTCACCttaaaatgaagaaatatcaaTGCGGTGAATGTGAGCATGCTACCGCTGCGAAGGGGAATCTAAAACAACATATAGAATGTGTTCACttgaataacaaaaaatatcaatgtgatgaatgtgaatatgcttcagCTATCAAGGGGAATCTAaaacaacatatagaatctgttcatttgaatgaCAAAAAATATCAGTGCGATGAATGCGAATACACTACGACAGCAAAAAGCAGTTTTAAAATACACGTACAATCTATTCATTCCAATATTAGACACCTGTGTCATCTCTGTGAGTATGCTGCAACTGTAAAGAGTAATCTCAAgaggcatatagaatctgttcacatGAATATCAAATTATTTGCTTGCGATGAATGTGATTATGTTGCAAAAAGAATGCAGGGTTTGAATGTCCAtaaagaatctgttcacttaaaTATCAAAAATCATCAGTGTCATTTCTGTTATTATGCTACAGCTGTGAAGGGGAGTCTCAAGAGGCATATAGAATGTGTTCACCTGAAGATGAGAAAGAATCAGTGTCGTTTGTGTGAGTATAGTGCTTTTACTAAACGTCAGCTCAAAGCTCATTTAGAATCTGCTCACTAA
- Protein Sequence
- MDICGDDTSEKNNHPTVKLEDVKIEEQFTDEKGIHPRETFFYETENNPRKHVSGKMKGVTQNGRIDLNSQACNSEVEKLDHLEDIHSEQKKHKCHFCEFDSARRISLNQHVESVHSNMKKHLCNECEFAASTKQNLKAHVESVHLNMRKHKCNECEYSSNWKSLLRDHMKSVHMTIKKYQCDECKYATAVKAHLKRHIETVHLNIKKYQCCDCEYASAEKSGLKNHVHLNVKKYQCEECEYVTAISYNLKRHVVSVHSNIRHQCHLCEYVGTQKNNLKRHINSVHLNIKNYQCGECGYASAQKSNLRNHVESAHLNIRHQCHLCEHSFTQEMQLKRHIEFVHLNIKKYQCSECEYASAENRGLKVHMESVHLNIRHQCHFCEHVTNQKVSLKKHIESVHLKMKKYQCGECEHATAAKGNLKQHIECVHLNNKKYQCDECEYASAIKGNLKQHIESVHLNDKKYQCDECEYTTTAKSSFKIHVQSIHSNIRHLCHLCEYAATVKSNLKRHIESVHMNIKLFACDECDYVAKRMQGLNVHKESVHLNIKNHQCHFCYYATAVKGSLKRHIECVHLKMRKNQCRLCEYSAFTKRQLKAHLESAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -