Moct023027.1
Basic Information
- Insect
- Myrrha octodecimguttata
- Gene Symbol
- -
- Assembly
- GCA_958510865.1
- Location
- OY294060.1:45603499-45616189[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0024 0.4 12.4 1.1 2 23 48 69 47 69 0.97 2 24 0.00013 0.022 16.4 2.3 2 23 76 97 75 97 0.97 3 24 0.0073 1.2 11.0 0.1 1 23 103 125 103 125 0.96 4 24 0.00012 0.019 16.6 0.1 2 23 130 151 129 151 0.96 5 24 0.0018 0.3 12.9 0.6 1 23 157 179 157 179 0.98 6 24 0.021 3.4 9.5 0.0 2 20 190 208 189 209 0.93 7 24 5.9e-07 9.7e-05 23.8 1.9 1 23 236 258 236 258 0.98 8 24 4.9e-06 0.00081 20.9 0.4 1 23 264 286 264 286 0.98 9 24 0.0005 0.082 14.6 1.9 1 23 292 315 292 315 0.97 10 24 0.0013 0.22 13.3 1.6 1 23 325 348 325 348 0.97 11 24 1e-06 0.00017 23.1 0.7 1 23 424 446 424 446 0.98 12 24 0.0028 0.46 12.3 0.5 1 23 452 474 452 474 0.98 13 24 0.24 39 6.2 0.7 2 23 478 499 477 499 0.97 14 24 0.00019 0.032 15.9 0.7 1 23 529 551 529 551 0.98 15 24 0.0001 0.017 16.8 0.5 1 23 557 579 557 579 0.98 16 24 6.7e-06 0.0011 20.5 3.0 1 23 585 607 585 607 0.97 17 24 0.014 2.3 10.1 3.2 1 23 613 635 613 635 0.92 18 24 9.3e-05 0.015 16.9 0.6 1 23 975 997 975 997 0.98 19 24 5.7e-05 0.0093 17.6 4.7 1 23 1005 1027 1005 1027 0.98 20 24 4.7e-06 0.00077 21.0 1.2 1 23 1033 1055 1033 1055 0.97 21 24 0.0019 0.32 12.8 0.6 1 23 1063 1085 1063 1085 0.98 22 24 0.0022 0.37 12.6 0.1 1 23 1238 1260 1238 1260 0.97 23 24 0.35 58 5.7 0.1 1 23 1264 1286 1264 1286 0.98 24 24 0.0039 0.64 11.8 0.1 1 22 1292 1313 1292 1313 0.96
Sequence Information
- Coding Sequence
- ATGCTTCACAACGTTGAGTTTTTAGTTCCTAAGAATACAGAGGATAGTGAGTTCGTCTCTAATGATAATTTGGTTCTTGAACCAACTTATTCAAATAAAGAAGTGGACTCAGAGAATAGACCATCAGAAAAGAGAATAATTCAATGTTCACACTGTGGGGATACATTCAATGACTATGATTTATACACAATACATGAAAAAACCCACCAGGTTGAAGATGAATTAGAATGTGCAAAATGTAAAAAGTCTTTCAAGAAGATATCTACTTATAGAAGGCATTTATTAACTCATCAAGATGATAAGCTTTTCAATTGTGTTATATGTGAAGCTGGctttaattctgaaaataattataatgtACATATGGCCCTCCATGGAAGTTCTTCAACTTGTCCTATCTGTGGTTTGTCATTTCAAAGAATGGCCAGTTTGAAGTCTCATTTAGCAATTCATCAAGTTGAGGAATTCCATACTTGTCCAGAATGTGCATCAGAGTTTGAGAATATGATTGAATTGAGAAAACACATCAAAACTCATACACAAGTGACCACAGAATCAAAGTTATTGATTTGTAATTATTGTAAAGTTAAATTTGATACTCCtatattattgaaacaacatgTTGCCTGCCATATGAAGGTTAAGAAACTTGTTCTAAATGGAAAGAAAACAAAGAAAGAACAAGTCTCGACAAAAGAACATAAACATAAGTGTAAGGTGTGTGATAAGAGTTTTCCAAAATTATCCTTACTGGAACGACATTTGAGGATTCATAATGGAGAACGTCCATTTGTTtgcCAAATTTGTTATAAAGGCTTTGCACAAAAAGGTACTCTACAAATCCATATGATGAAGCATTCAGGTATAAAACCATTCAGCTGTACACTATGTCCTGCAAAGTTCCACCAGAAAGGCAATTTGAAAGTGCATGTTCAAAAAACTCATACTGCATCTTCAGAaggggaaaaaattttcaaatgctcTGAATGTGACTGCATATTCAAGAAAGTAGCATCTTTGAATGGTCATATGACAAAAATTCATGCAGATACTAGCTTAATCAGCATAACCACAGTTATTGATCAATTGAAGACTTTAGAAAAGCAATTGGGTAGTAAATCAGTTGaagtgaaagaaaatgaaaacatGAAGGATAccaaaaaaatgtataaaatagACAATCCTGATGAAGCACTCTCTGAAAGTAAGATCAACCAAGGCTGCAAAGTCTATTCTCTCATGCAAAAATCCATAGGAACCAATAAGGTATACATGTGTTCATATTGTGATAGAGAAACTAAAAAACCTTCTGATTTGATACGTCATATTCGAACTCACACTAAAGAGAAGCCATTTAAGTGCCTGCAATGCAATAGTTCTTTCGCAATAAAATCAACACTCCTAGGACACATGCAAATACATAAAGGAAAGAAATGTGGAAAATGCTCCAAGGTTATTTACTCTAGCAAAGTATGGAGAGCCCATGCCAGaaaacatGAGAATAACTCTATATATAAATTTGATCCCAAGCCACAAGAAAGTCATGACAATGGACCGAAACGAAAAAAAGTCATAGAAAATCCATTCAAATGTTCATTATGTTCAGCATCATTTTTAAGGCCAGTCAACCTTAAAAGACATTTGCGATTACATACTGGAGAAAGTACATTCAAATGCTTGATATGCTCAAGatcaTTGGCCACAAAATATGCATTGAAAGAGCACATTAATAGTCATACTGGTATAAAAAACTTCAATTGCCATCTGTGTGATAAAAAATTTATGACTTCTTCATTATTAAAACGCCATATTGCCTCTCATGATGACACAAAACCATATGAATGTCCATATTGcaaaaaaagattcaaaaaCTTGATAGTGTGCAGAAAACATATCGATTCTCACAGGGAATCTAGAGAAGCTGAGAATACCTTAGACGAATGTAATTTTTTAACCGAAGATGGAAATATTCCTGTTGTTGAATCAACAGAAATGTCACCAAGGAAGACCACCATATTGAGAGTGGATACAGAAGGAGTAGTATTTGATAGCGCTTTTGACATTCAACAAAACAATAGTGTAGTGGAGAGTTCAGTTCTTGAGTCGACTCAATCTACCGATCAACCAGTCATAGCAGAATCAACCCCAATTTTAGCATCAGATCAGCATCAAAATCTGCAAACCATTTTAGTGGATTGTCAGGATTTACAAAATAGGGAGGTGCAAAACTATATTTTATCCCAGTTAAAACTTCAGTCCAATGATGCCATTGTACTTAATGCAGTTAATGAAAACAATGAACAATCTCAAATTGTGTTCAATGTACAAACACTTAATGTTGACACTTTATCTGATGTTGGGAATGCTATAAATGACGTTACATATGCTGATGAATTTGTGGAAAAATCATTGGACCCAGTATTTAGTTTCCCAGATAAGAGatcattattgaaaaaaaatcaaattatcgCTGTTGATACTCCAGAAAATTGTATTCCCAATGATATTGGAGATAATTTTCTGTCGAACAATGCATCTTTATATCCAAATACACAAATAAATTTCGATAGTACAACAGAAATGAATTCCACGATAAGTATGATAGATTCGACACACCATGAATTCATTGACGAATTGGGGAAAACTACCACTAATGCAGAATGTAATTTACTATTTGATGTCCCTTCGGAAACTTCAGAAAATGTTAATCTAAACGTGATCCATTGCATgagttgtaaaaaaatgttcgatgcAATGGAATCTTATCAGATGCATGTGTGCGAAAAATCCGTGTCTAAAAGGAGTAACATTATTTCCTCATCTCCTGATAATCTTAATCAAAGATTCAGTCAGATTGATGAAAGAGAAAGAAGAAATACTGAGGAagccaaaaataattcaaaaaaacctGCCAAGAAGTTTTTCAGTTGTGTTTATTGTGGGAAAGAATTCAGTAGTAGAGGTGTTTATATGAGACATGTCAACTCAcatcaaaaaaaagaaaatggtTTGCATAAATGTAAGTTTTGCTTCAAAGAGTTCAAGAAACCTTCAGATTTGGGACGACATTTGAGAACACATACTGGAGAAAAACCATTTGCTTGTGACCAATGTGACAAAAAATTCTCTTTAAAATCCACGTTGGAAGCTCACTACAAAACACACAATCCAAGTGCCGTTAAACATTTTGTTTGCGAAGTTTGCAATTCCTTCTTCAGTTCGAAAGCAAGTAGAAAGTTGCATATGCTTGTGCATACTGGAGCTAAACCAAATAAATGTTTCTTCTGTGACCAACACTTCAGAACTGCTGCTCACAGGAAATGCCATGAAAAGAAAATTCACTTTTCTGGTCGTAAAAAGGTGAACCAGAGTAGTGCTAAGAAAATTACTAATTTGTTAGCTGCTGCAGTAGATATGGCTGTGAATGAAGCAAATTTAGATAATCAAGACTTGGAACAATCAAAAATTCCTGAATATTCTGAGATACAGGTGGAAtatactgatgaaaaatattcttcagagtCTATTCCTATCGACCAAGTGCTATTACAACAACTACAGAGTTCAGACATCCTTCTAGAAGAGATAGACCCTGAGGTTCTCGCTTGCACTGAAAGTGTAAATGATTTGGAGGTTATAGAAGCCACTGGTATTATTAGCAGTGATTGCTTCGAGGAGAATGTCAACTCCATCAGTCATATTGTAGGTAATTTTGTTTGCGAAATATGCCAGCAAGATTGTTCTGGTCCTGAAGCTTTAAAAGAACATATGGAGCTACATCTGAAAAAGTTTGAATGTGGACAGTGCAGTTTGTGGTTTTCGTCAGTTGAGGCTTTGTCCGAACATGAAAGATCACATTTGGTCACTGAATCATATTCTTGTTTTATTTGTGATATTGTCTTTTACGGAATACAACAATTGAAAGCCCACTTAAGAAGGTGA
- Protein Sequence
- MLHNVEFLVPKNTEDSEFVSNDNLVLEPTYSNKEVDSENRPSEKRIIQCSHCGDTFNDYDLYTIHEKTHQVEDELECAKCKKSFKKISTYRRHLLTHQDDKLFNCVICEAGFNSENNYNVHMALHGSSSTCPICGLSFQRMASLKSHLAIHQVEEFHTCPECASEFENMIELRKHIKTHTQVTTESKLLICNYCKVKFDTPILLKQHVACHMKVKKLVLNGKKTKKEQVSTKEHKHKCKVCDKSFPKLSLLERHLRIHNGERPFVCQICYKGFAQKGTLQIHMMKHSGIKPFSCTLCPAKFHQKGNLKVHVQKTHTASSEGEKIFKCSECDCIFKKVASLNGHMTKIHADTSLISITTVIDQLKTLEKQLGSKSVEVKENENMKDTKKMYKIDNPDEALSESKINQGCKVYSLMQKSIGTNKVYMCSYCDRETKKPSDLIRHIRTHTKEKPFKCLQCNSSFAIKSTLLGHMQIHKGKKCGKCSKVIYSSKVWRAHARKHENNSIYKFDPKPQESHDNGPKRKKVIENPFKCSLCSASFLRPVNLKRHLRLHTGESTFKCLICSRSLATKYALKEHINSHTGIKNFNCHLCDKKFMTSSLLKRHIASHDDTKPYECPYCKKRFKNLIVCRKHIDSHRESREAENTLDECNFLTEDGNIPVVESTEMSPRKTTILRVDTEGVVFDSAFDIQQNNSVVESSVLESTQSTDQPVIAESTPILASDQHQNLQTILVDCQDLQNREVQNYILSQLKLQSNDAIVLNAVNENNEQSQIVFNVQTLNVDTLSDVGNAINDVTYADEFVEKSLDPVFSFPDKRSLLKKNQIIAVDTPENCIPNDIGDNFLSNNASLYPNTQINFDSTTEMNSTISMIDSTHHEFIDELGKTTTNAECNLLFDVPSETSENVNLNVIHCMSCKKMFDAMESYQMHVCEKSVSKRSNIISSSPDNLNQRFSQIDERERRNTEEAKNNSKKPAKKFFSCVYCGKEFSSRGVYMRHVNSHQKKENGLHKCKFCFKEFKKPSDLGRHLRTHTGEKPFACDQCDKKFSLKSTLEAHYKTHNPSAVKHFVCEVCNSFFSSKASRKLHMLVHTGAKPNKCFFCDQHFRTAAHRKCHEKKIHFSGRKKVNQSSAKKITNLLAAAVDMAVNEANLDNQDLEQSKIPEYSEIQVEYTDEKYSSESIPIDQVLLQQLQSSDILLEEIDPEVLACTESVNDLEVIEATGIISSDCFEENVNSISHIVGNFVCEICQQDCSGPEALKEHMELHLKKFECGQCSLWFSSVEALSEHERSHLVTESYSCFICDIVFYGIQQLKAHLRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -