Basic Information

Gene Symbol
SNAPC4
Assembly
GCA_958510865.1
Location
OY294056.1:45316182-45323107[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 2 4.2e+03 -0.8 0.0 3 18 94 109 92 120 0.83
2 6 1.1 2.2e+03 0.1 0.0 22 45 175 200 161 201 0.84
3 6 2.1e-06 0.0044 18.3 0.1 1 43 207 251 207 254 0.93
4 6 1.2e-10 2.4e-07 32.0 0.1 1 46 260 309 260 309 0.95
5 6 2.4e-06 0.0049 18.2 0.0 3 46 318 361 316 361 0.96
6 6 0.12 2.5e+02 3.1 0.6 4 18 370 384 367 410 0.64

Sequence Information

Coding Sequence
ATGGACCAAGAACTGGATGATATCAAATCTTATACTCCTTTAGCGAACGTCAACCTTGAGCCTCATAATAATGCTCAGTTCAAATTCGGGAAGTTTATTCTATCTGGAAACAGTGATAGTGAAGATGTATGTATACTATACCTTAAAGAACCATTCAGACAGCTAGGTGCACCATATTTCAAAACCAAAAAGGATTTGTTCTGTAGTGATCCTAATAAGGATACTTTGGATCGCAAAGAAAGGGGATTACTGACaatctatcaagtttcaatgtCCTCAAAATGGTCTAAAACAGAATGTGATAACCTCACTAGAGGTGTTCAGTTGACTTataataacaataaacaaaTCGCCGCTCTAAATGAAATAAATGCCTTGAAAGAGAAACTTCATAAACTAGATGAAGATTCTCATGTTAAACCCCAGataattgatgaaattgaaagaTTAAAGGCTGAAATTAGAAATCTGGAAGCTATCGGAATTAATGATGTTCCTCCTCTATCGCAAGATAAATTCATAGACTGGGAacatatttcaacagaatttttaAGGGACAAACACAATGCCCAGGAATGTTCAAACTTCTGGCACATATACCTACATCCTGATTTCAACAAATCCAATTGGACCAGGgaagaaaataagaaaatcagGCTTTTagctgaaaaatataataaacaaaattgggATTGCATGGCTGTAGAACTTGGTACAAATCGCAGTGCATTTTCTGTTTTTCTTCACTATTCTAGTGCTTTATGTGATCAATTGCCCAAAAGTCGATTTACAGAGGGAGAAGACAAAAAACTTGTACAACATATTGAAAGCAAAAAACTTGGATCTTATATTCCTTGGAATACCATTTCTGAATTCTTTCCAAATCGAACCAAAGATCAGTTAAAGCATAGGTACAAGTATTACTTACGTAAATCAGATCAATATACCCAACAGTTTTCAGATGCTGAGGACATTTTAATTATGCTTTTGGTAGAACGTTTTGGGAGGAATTATATGAAGTTTACGAAGTATTTACCCACTAAATCGTATATGCAAATAAAATCCCGATATGAAAATCATTTAAGGTTCCGCAGAATAAAAGGGTTTTTCACTGTGGAAGAAGATAAGAAAATTTTGGACcacttcaaaataaattcaaaaactgGGTCCCTTTCAGTTGCTTTAAACAGAAATAGAATTCAAGTTAGACAAAGATATAAGAAGTTGAAAGACTTCTTCAGTAAAAATCCGGAAAAATCACTGGATGATGTACAACGAAGATCTGGAGTCAAAGACGAAACTTTCAGAAGATTGGAGTTCCTAAAATGTATTGGAGATCAATTCAAAGAATGTGTTGATGTTCCTACAattgaagaaattgaaagaaaattaggAAAGAAAAAGCAATCAAAAAATGGTCATGATATTGATATTTTGCTCCTTAATTTTTTCAGTACCTCCTACTCATTCAAACAAAAATCCTTGGAAATTACAGCCCCAAAAATAACAAATGCAGCAGATAAAATATATGACATCCTCAAATCATGGAGAGTTAAGCTTGAAATTCCTGaggaaataagaaaaaataacATGATAGATATAATAGATgtggaaattttgaatttgttgagAAGTAAATATCAGTCTGACATACATACACCATCAATAGATGATTTACTTCCCCCCAACATGAATACTCTGGTTGGTTTAAGAGGTTTactgttaaaaaatcaaatattgaaaGAGTCCAAATTCAATAGTGTCCTCTCTTTAAATAATAAGTTACCCtatataagaaatgatcaaGATAATGAAATAGCTCGTGAActtcttgatatttttcataaaaaggACATTAGCAGTCAATGTATTATACATAATGAGAGGAGTCTCTTTTTAGAGAGATTCATATCCATGTTTATGTGGCCAGCATTACTTTCAATTGAATTTCCAAGTGAACAAATATCTAAATTAGAACTTAGGTTCAAAAACTCAGAACCgtccataaataaaaaaaagcaTGAAAATAAATGTAAAAAGAATATGATAAAAAAGAAGATTGCGCAAAACGTCAATGTACCTGTTGCCAAGAAGAGGAAATTGAATGATGCAAAACAGCAGAATTGTAATCTACATACATCTATTCAACCTCAAAGGTTTAGTTCCcgactgaaaaatagaaatcaaaTTACACACAAAATTGAAACAGTAGAGGTTAAAGGTGTATTTTCAGCTATAGAAAGACCTCATGATGTGATAAGTGTGATGGAAAAGAATCCTGAACATCTTAATGGGAGAAACTCGAACAGTATAGatcaaaaaatagaaattacaAAATTCACAAACACGGAAAGTTGTGGCAGCAGAAAAATCgttccaaaaaatttaaatgaaattaccCCACAAAATCTTCCTACCAATCTGGTCAAAGTACATAAAAGTGAAATAGTTAAGTTATTGCAGAACAATAAACCtgtaaaaatattcaaaattcgaagtATTAAAAAACCAGATGGAACGATAATTACAACTAATCCTTCAAATATGAATATCAGTGGAAGCATGGAAAATATAgatgaatcaataattacatCAGAAGGTTCTGCTTTGGTTCCTTTCATTCAGAATATGAAGAATAATTTGAAGGCAAAGTTGATCAACACATGCCAGAAAATAAACGTCAAGAATCTGaataattccatcaaaaataacaGTGAATGTAAACCATTTCGATATAGAGAAGATATAATCCATTCAACAAAGagtccaaaaatattttctgaatcttCAAAAAACACTCTCCTCAACAATGTTGGAGTTGACTTTCCAATTGATTTAACTGAGAATCAAGGAATGAAAAGTGATGTTGGACAACTAGATCAACTAATAAAGACAGAAAGAGCTTTTGATTTGACATCTTTGTGA
Protein Sequence
MDQELDDIKSYTPLANVNLEPHNNAQFKFGKFILSGNSDSEDVCILYLKEPFRQLGAPYFKTKKDLFCSDPNKDTLDRKERGLLTIYQVSMSSKWSKTECDNLTRGVQLTYNNNKQIAALNEINALKEKLHKLDEDSHVKPQIIDEIERLKAEIRNLEAIGINDVPPLSQDKFIDWEHISTEFLRDKHNAQECSNFWHIYLHPDFNKSNWTREENKKIRLLAEKYNKQNWDCMAVELGTNRSAFSVFLHYSSALCDQLPKSRFTEGEDKKLVQHIESKKLGSYIPWNTISEFFPNRTKDQLKHRYKYYLRKSDQYTQQFSDAEDILIMLLVERFGRNYMKFTKYLPTKSYMQIKSRYENHLRFRRIKGFFTVEEDKKILDHFKINSKTGSLSVALNRNRIQVRQRYKKLKDFFSKNPEKSLDDVQRRSGVKDETFRRLEFLKCIGDQFKECVDVPTIEEIERKLGKKKQSKNGHDIDILLLNFFSTSYSFKQKSLEITAPKITNAADKIYDILKSWRVKLEIPEEIRKNNMIDIIDVEILNLLRSKYQSDIHTPSIDDLLPPNMNTLVGLRGLLLKNQILKESKFNSVLSLNNKLPYIRNDQDNEIARELLDIFHKKDISSQCIIHNERSLFLERFISMFMWPALLSIEFPSEQISKLELRFKNSEPSINKKKHENKCKKNMIKKKIAQNVNVPVAKKRKLNDAKQQNCNLHTSIQPQRFSSRLKNRNQITHKIETVEVKGVFSAIERPHDVISVMEKNPEHLNGRNSNSIDQKIEITKFTNTESCGSRKIVPKNLNEITPQNLPTNLVKVHKSEIVKLLQNNKPVKIFKIRSIKKPDGTIITTNPSNMNISGSMENIDESIITSEGSALVPFIQNMKNNLKAKLINTCQKINVKNLNNSIKNNSECKPFRYREDIIHSTKSPKIFSESSKNTLLNNVGVDFPIDLTENQGMKSDVGQLDQLIKTERAFDLTSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-