Basic Information

Gene Symbol
stc
Assembly
GCA_943737955.2
Location
OX031316.1:59238083-59241919[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1 4e+04 -4.2 1.6 15 19 479 483 478 483 0.81
2 14 0.032 1.3e+03 0.7 0.2 4 10 512 518 511 519 0.95
3 14 3.2e-07 0.013 16.6 15.1 1 19 524 541 524 541 0.93
4 14 0.0072 2.9e+02 2.7 13.4 3 19 579 595 577 595 0.92
5 14 1 4e+04 -4.7 1.5 9 13 601 605 600 606 0.71
6 14 7.1e-07 0.028 15.5 16.3 1 19 635 653 635 653 0.96
7 14 3.3e-05 1.3 10.2 16.3 4 18 701 715 694 716 0.86
8 14 0.025 9.9e+02 1.0 12.2 1 11 756 766 756 778 0.91
9 14 1.3e-09 5.4e-05 24.2 13.2 1 18 783 800 783 801 0.97
10 14 0.36 1.4e+04 -2.7 0.8 5 10 829 834 829 835 0.78
11 14 1 4e+04 -7.7 10.8 10 18 848 857 837 858 0.79
12 14 7.8e-07 0.031 15.4 12.6 1 16 894 909 894 920 0.90
13 14 4.7e-07 0.019 16.1 13.7 1 19 927 946 927 946 0.96
14 14 0.27 1.1e+04 -2.3 0.6 7 12 961 966 955 966 0.68

Sequence Information

Coding Sequence
ATGTCAGCGGAGCCGCATGCCTCGCAAACGGCTTCGCAGCAACCAGAGACGAACTTGGAGCTATGGCAGCGTTTCCTGGGTGGTGGCAACACAGCTGACGCCAGCCCCGGATTGCACGGCGACACCACGGCTAGtcagcagcaccaacaacagcacaacaacaattatgtTAACTTCAATCAATTCATAATGCAACACAACTTCTTGGGTGGCCCTGGAAATTTGAATGGCACTGAAATGGGCGGTTACGGCGACGGGTACTTCGGCTCAAACACACACGCATTCGATTTATTCGGCTCATCAGATTGTTCAACTGTATTTAATAATGGCGGCTCCTCCAGCTCGCAACTCTTTCCTTACAACAACGATAGTTCCAACAATGAATTTTACATAACCAGTAACAACTACAACTCCAATGAACATCTGTACGATAATCTGTATACGCCATTCGGCAACACGGGCATCGGAGGATCATCGTACTTCACCAATCCCTTTGCCACAGGCTTCGATTTCAGTGCATTGACTTCACCGTCATCGAACCTTCAGGCGAACGCGCCTGAATTCGTACCACGTCTCAATAACCTCTCGTTGAACGAAGGTTTTGATGATGCAGCAGGAGATAAAAAGGACGagccaaaaacaaaaactaactTCAATTATTCCAGCATTGTTGCAGCCGGTGAACAACTTGCTGCACTTCAGATCGATAACAAGGATAGACAGGGCACAAAATCCTCTACGAGGGACATAGACTCGGACCAGGCAACTACATCAGCTCACCTCAAACCGCTTTCAAATAATACACCACCAATTAACGCTACAGGCGCCACTATTAAACCTCCTACTCAGCCCTCAAAcggcaacaataacaacaactcacGTGCATCTTCCGGCTTGTCTAACGGGAATGGAAACGGGACATCTGCAGAAAAGCCAACTGCTCGCGAACGCGATCGTCGTCACACCAACGGATGCCGCTCGATGGACTATGAGCGTGAGGATCGCTATGAGCGTGTGGAACGTGGCGCAGAACGTGCTGCTGGCCACGCTGTGCATCGCGGCAGCAATCAACGTGATCGTGATCGCTACGACAATCATCGCAGCAACAAGCGTCGTGACGACTGGAACCGCAACCGCGACCGCATCAACGGCTTCCGAGTGGACGAGAAATACTCGTCAGATAATGGAAAGGACAGTCCACTGCCATCTCCAGAAAAGAAATCCCCGAAGAAAGTACATCCAGAAAATGAGAAGCTATCGCAGCGCGAAAAACTAATACGCGACATTGAAATGCGTCGTCTTGAGTGTCTGGTTTGTGTGGAGCCCATCAAGGCGCACCACTCGGCCTGGTCTTGTGTCAACTGCTACCACATCCTGCATCTGCAGTGCATCATCAAGTGGGCCTCCAGTTCGAAATCGGATGACGGCTGGCGCTGTCCAGCCTGCCAGAACGTGGTGAAGGAGGTGCCGCGTGACTACTATTGCTTCTGTGGGAAGCTCAAGAATCCGACGTACACGCGTCAGGACATCGCGCACTCTTGCGGCGAGGTTTGTGGACGCATAGAAACCTGTTCGCACGCCTGCACGCTTCTCTGTCACCCGGGGCCCTGTCCGCCCTGCCAGGCGAATGTTAGGCGTGACTGCGGCTGCGGCCGGACAACGAAAGTCATGCAGTGCTGCGTAAAGGATCCAGTCGAATGCGATGCCATCTGTGCCAAGTTGCTCAACTGCGAGCTGCACAAATGCACCCTGAAATGCCACACCGCCAAGTGCCATTCGTGCCCAAAGAAGGTGGACCAGAGGTGTCACTGCGGAAAGCAGGACCGACAAGTGGCCTGCACCCGTGATTCGCACGACAAGCGCAACTACTCGTGTGGCAAGCCCTGTGGCCGCGATCTATCGTGCGGCAATCACAAATGCAAGGACTGCTGCCATGCGGGCGAGTGTCGGCTGTGCAAGTTGAGTCCAGAGGTGGTGACCTCATGTCCGTGTGGCAAGATGCCCGTGATGCAGGGACAACGAACATCGTGTCTGGATGCCATAGCAGTCTGCGGGGGCGTGTGCGGCAAAACACTGCGCTGCGGCAAAGCAGCTCATCCACACCATTGCACCAGCAAATGTCATTTGGGCAACTGTCCGCCCTGCAATAAGCAGACTGCTGTCAAGTGTCGTTGCGGCCACATGGATCAGATGATTAAATGCCGCCAGCTGTCTACACGCGCAGATGACGCCCGTTGTAAAAAGCGCTGCGTCAAGAAGCGCTCGTGCGGCAAACACAAATGCAATCAGGAGTGCTGCATCGACATCGACCACATCTGTCCGTTGCCCTGCAACTACACGTTGTCGTGTGGAAAGCACAAGTGCGACCAGTCTTGTCATCGTGGAAACTGTCCGACGTGTTACCGCAGCTCTTTCGAAGAGCTGTACTGCGAGTGCGGCGCCGAGGTGATCTATCCGCCAGTACCGTGCGGCACCAAGCGCCCCAACTGCAAGCGGCCCTGTTCGCGTACGCATCCCTGCGACCATCCGCCGCAGCACAACTGCCACTCGGCTGCCAGTTGTCCGCCTTGCATGATTTTCACCACCAAATGGTGCTTCGGTCAGCACGAGCAACGCAAAACCATTCCGTGCTCGCAGCAGAGCTTCAGCTGCGGCCTCGCATGCCAGAAAGCGCTCCCATGTGGACGTCACAAATGCATCCGTTCCTGCCACGAGGGCGTTTGCCAGCAAGTGTCCGGAGAAGTGTGCAAGCAAAGCTGCACAACGCTGCGTGCGTCCTGCGGCCACAAGTGCATGGCTCCATGCCACAACGGTGCTTGTCCAGAGACGCCGTGCAAGGAAATGGTTGAGGTACAGTGCGATTGCGGCAACCGCAAGCAACAGCGCGCCTGCCATGACTTGGCGCGGGAGTACAGCCGCATAGCCACTGCTCAGTTGGCCTCGTCCATGGCCGAAATGCAGCGTGGAAACTACATGGAGCTCAGTGAGATTTTGACCCCGGTTAAGGCGCATAAAACCAATAAGACTCTCGATTGCAACGACGAGTGCCGGCTTCTGGAACGCAACCGTCGCCTCGCCATTGGTCTTCAGATACGCAATCCCGATTTGCAGCAGAAGCTATTGACCAAATATTCTGATTTTATCCGCAACTTCGCCAAACGCGATCCGGTGTTGGTGAAGTCCATTTACGACGCCCTCACAACTCTGGTCAAGCTGGCCAAGGAGAGTAAACAGAAGTCTCGCAGCCACTCATTTCCGACCATGAATCGCGAGAAGCGTCAACTGGTGCACGAGATGTGCGAAGCCTTCGGCGTGGATTCGGTGGCCTACGATGCTGAGCCAAACCGAAACGTGGTTGCAACAGCTCACAAGGATCGCTCCTGGCTGCCAGCCACGAGCATCATAGAAGTGGTACAACGCGAGTCTGGACAACGACGTGTTCCAGTACCGAGCAACAATGCCTGGGGCGGCGCCAAGAGGTAG
Protein Sequence
MSAEPHASQTASQQPETNLELWQRFLGGGNTADASPGLHGDTTASQQHQQQHNNNYVNFNQFIMQHNFLGGPGNLNGTEMGGYGDGYFGSNTHAFDLFGSSDCSTVFNNGGSSSSQLFPYNNDSSNNEFYITSNNYNSNEHLYDNLYTPFGNTGIGGSSYFTNPFATGFDFSALTSPSSNLQANAPEFVPRLNNLSLNEGFDDAAGDKKDEPKTKTNFNYSSIVAAGEQLAALQIDNKDRQGTKSSTRDIDSDQATTSAHLKPLSNNTPPINATGATIKPPTQPSNGNNNNNSRASSGLSNGNGNGTSAEKPTARERDRRHTNGCRSMDYEREDRYERVERGAERAAGHAVHRGSNQRDRDRYDNHRSNKRRDDWNRNRDRINGFRVDEKYSSDNGKDSPLPSPEKKSPKKVHPENEKLSQREKLIRDIEMRRLECLVCVEPIKAHHSAWSCVNCYHILHLQCIIKWASSSKSDDGWRCPACQNVVKEVPRDYYCFCGKLKNPTYTRQDIAHSCGEVCGRIETCSHACTLLCHPGPCPPCQANVRRDCGCGRTTKVMQCCVKDPVECDAICAKLLNCELHKCTLKCHTAKCHSCPKKVDQRCHCGKQDRQVACTRDSHDKRNYSCGKPCGRDLSCGNHKCKDCCHAGECRLCKLSPEVVTSCPCGKMPVMQGQRTSCLDAIAVCGGVCGKTLRCGKAAHPHHCTSKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIDIDHICPLPCNYTLSCGKHKCDQSCHRGNCPTCYRSSFEELYCECGAEVIYPPVPCGTKRPNCKRPCSRTHPCDHPPQHNCHSAASCPPCMIFTTKWCFGQHEQRKTIPCSQQSFSCGLACQKALPCGRHKCIRSCHEGVCQQVSGEVCKQSCTTLRASCGHKCMAPCHNGACPETPCKEMVEVQCDCGNRKQQRACHDLAREYSRIATAQLASSMAEMQRGNYMELSEILTPVKAHKTNKTLDCNDECRLLERNRRLAIGLQIRNPDLQQKLLTKYSDFIRNFAKRDPVLVKSIYDALTTLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEAFGVDSVAYDAEPNRNVVATAHKDRSWLPATSIIEVVQRESGQRRVPVPSNNAWGGAKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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