Basic Information

Gene Symbol
JARID2
Assembly
GCA_943737955.2
Location
OX031317.1:43374939-43383436[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4e-22 2e-18 67.7 0.0 6 89 1910 1991 1905 1991 0.92

Sequence Information

Coding Sequence
atGGTGGTCTCGAAAGATTCCAAGCGAAAACGCAAGGAGTCTCCGCCACCGCAAGCAGCAGTGATTGAATCCTCGCCAGAAATGCCAAAAAGGACGAAGGTGCAAGCGCAACGAAAATTTGCTCAAGGACAAAATGCGCCTTCATCATCTTATACAGCAACCCTTGCGGCCTCATCCTCGTCCACGACCGGTGGACCCAGTGCATCTTCCGAGAGCCGTGAACCACCCACTGAAATACTACCAAATAAAAGACCGAAAACGGAGGATTTCCTaacatttctttgttttcgtGGAACTTCCGCCTTGCCTGCTcatttggattttttaaatcaaGGAAAAGGTGAAGAAGCGCTCAAAGTGacagagaagaaaacaattaaaacaccGTCGAAAATTGTCAAAAAAACGCCAATGAAAAAGGGTAGAAAGGCAAAAGCTTCAAAAGctctaaaaacaaaagcaaaggCAAAAGCCAGATCTGTCGATGAACCTGTGGCTTCCACGTCGGCGGCAGCTGCAGCAGCGGCTGCTAAAGCACTCTTAGCTGCACAAACTGTTACTTCCACTAATAGCGATAAAACCGTACCACCTCAAACACATGCTAATGAAAATTCGAGATATAAAAAATTGGTCGCAAATGACCGTTCTCAAAAATTTGGTAGTACCCAAGAGGAACTGAAGGATACACGCTCTCCAACCAACAATGAAGTTGTAGAGCAGAAGGAGCAGGGAAATCGACGCGGTCGAACCGTCAACGAAAAATCAAAGATCGAggaaaaaactaataaatccCCTGAGAATAAAAGACGTTCCAATCGGACGAATATAAAAGAAGTTAGACTTCTGCTTGAAACCAgagagaataataaaaatgatgatgatgattacgcCTCAGCCAATGAAGCCACCGATCAGAAGGCGGCAGATTTCAAAGATCAGGAGGAGTCTtcgaaaaaatcaaaaacaccAACTCAAATGTCAGTGCACACTTCTTCCACACCAACCAAGGAAGCCGAATCCGTTTCACATTCAACTGTTTCTAAAGGAAAGAAGGGCAAAGCTTTTGCAGGCAAAAAGACCAACGCTGAGCACAAGGATACTGAGGTGGTGGCGGTGCTGAAGGAGGCATCAAAAGAATCTGAAAAGTCAGAGCCACAACACCTTAACAAAGCGAAACAACCCATTAAAAGACCGAGGCAGAAGGAATCACCAATTTTCATACCCTCTCCAGAGCCTACAGGTCGCATGACTAGACAACGTGCTTTTTTTGAGCCTGTCAAAGTGCTTCCAACCGATTGCGCCGAACAGATGTCAGTAGAGAAGAATGGCAATGAAGAAATAGAAACTCCCACGGAGGATACACCTGAAATAAAGGacaaatctaaaaaaattaacccGGAAGTTGGTAAAAGAAACGGTAAAAATTCGGAGCTATCAAAAAACTCACTTACTGAGAGCAAAGTAgaagagaaaattaattctttgaATGTATTCGATTTCTCTTCAGATGATGAGCAACCTTTGTCGAAGTCaatcaaattaaagaaaagtccGACATCAGGAAGTCGGAAGAAAATTTCACAAGCCGCAAAACGTAAAGGAAAAAGGATGACTCCAAAAAAGTTACAAGAAATCTCGCGTGATCTTGTAATCGACAAAAAGAAGGAGGAAATGAAAATCATTGAGGAAGAAATAAAAGGTGATAAGAAAACATCGATTCAAACCGAACCATCGGGAGAAAAAAATAAGCGCTCCggtaaaatggaaaaaaagaaacaaactgCCACTGAATCATCTTCACAAAATGAAGCCAATACAGAGGTACAGGAAGAAGCTGGAAATGAAGCCCCTACACCCCCACTTGTAAAGAAAACCACGTCTAATATACGTCAACAACGCAAGATAAATAAACCGAAATCTGATATAACGACTTCCAATGGTACTGCACCAAATGAGAAAAGCCTCTCCGGCTCACCAGTTAGAAGTCAGCGTCCATCACGGAAGACGAAAGAAGCTGCTGCCATTTATATGGGCATCATTGGCCAAAAGCTGCAACAGAATGaggatgaagatgatgatatGTCGTTGAATAGCTTTCCAGATTTACCGAATGTTAAGGAAATGGAGAAGATGGagattgaattaaaaaagaatgcaACTTCTACAACTCCTCCAACAACCGCGAAATCACCAACGAAGATAAACGCAATTGCTGAATTGGAAAAGCAGGTTGGTGGAAGGCGAGGACGTCCACCGAAGCAGGGGCGTCCGCCGCCGTCGCAACAGCCGACGACGCAACCTCCAGCTAAAAGAGAAATGGAGGGTATGCTGGTCAAGAAGGGGGCGTTAACAAAGAATATATCATCAAATTTACAAAGTGATAAAGACAAAGACAAACAACCAGAACTACAGGACCAGAATAAGGACGACTCTGAAGACGAGGATTTTTTACTGAATGAGGAAGTAAACGAAACCAAGCGAAAACTGGAGAAAAGTTTTAGTGATTCAGATGATGAGCCGCTAGcagttaaagttaatttaaaatccAGTGATAAAGATTTAGACAATGATTCCAGAAAGTCAGATTACGACCAACCGTGCAATGTTTCAATCACCTTAACAACGCCTCCAGCAGGTGGCAAGCAATcggcaccatcatcatcaacactTGTTAATGCTGTGCCAACAAAGATTTCAACATCAACTACTGTTCCCCAAAATGTAACAGCATCACAAACAGCGTCTCTTAAAACTACCGACAAGAAATCCTCCATTCCAAATTCCAAGTCCTTAAATAAGCCCGCAGGGTATAATTTGCCACCGACCACACAGAACTCAAATGCATTTATCAGCAAAATGGAACATAAACTGATCTCCCCAAATTTGGCTTCCTCTTATTTGCCGCCAGCATCTCCACATTACCACGCCAGACCCTCACCTCACTCGACAATTCAAACAGCAAAATCTCCGACACAACCTCCCCCTCCGTCTACGAAGATGACACATATTTCGCCGCCACCGCCTCCACCACAATCCCCCATGAAGTACCAGACTCCGCCCACCACATATCCACCTCCAATCGAAGCTTATCCCTCACCAAAAATTAACCCGAATTTTCTCACGCCGAAATTTGATCGTTCAGTCTTACCTCGCGCCAATAACTTCCCCTCGCCGTCGCCCATTAAATTCGACCTATCATCAACAACACCCAAATCGGGTGGCATCCAAAACTGTACGCTCAGTccaaaaactgttttaacGCTACAAACTCTCCCTGGAGGAGCAAATACAGGACAGGCACATCCATCGAACCCAACTAcatctgcagcagcagcagcaatagcAAGCACTGCTGCAAATGCTTCCACCTCGGATCCTCTGAAGGATGAGATTGGCTCAATTTTGGCTGCTAATCTAATGCCAAGCAAAGAGGAATCTGGCAAAATCTTTGGTATTGCTAGTGTTAGTCTTGCTCAAAGTTCCGGTCCAGACAACACCAAGTGCACCCTGGGCAAATGTGGTTCCATTCATAAGCCTGTGCTTGGTCCAGTCGTGCCAACCGAAGGCTACATTGGTGATCAACTTTCAAGTAAGGAACGTCGGAAAGCCAAAGTAAACATGACCCACGAACAAATTCAAAAGTGGCTAATTGAATGCTCCTCAAATCCTGATGAAATTCAAGATGACATGGATGATGACTATGATGACAATTTGCGACCCAATCTATTCGCAACAACGCCACCACCCACCAGAGATGATAAGGAGAGCACATCATTCAGTTCATCTTCGAAAGCAACTCGGGATCTGGGGAAAAGTGAAAGTGCCTGGTCCGGTAAGGGTCCCTCCTTGAAAGCTATACCAGTGGTGGCATCAACGAGCACAAAAGAAGATCAAACAAAGAATGACTGCGCTGTCATGCAGCATCCACAAACCTCAACGGCAGGAAATGAGACTCTACAACTCGGAAACGTTATGACAAAGGGAACTGCTACTTCCAAGCAGCACTCCAACAATGTTGAAAATAAACcatcaaaagaaaaattgtctgataaaaaatttgataaaaaatcAAGAGATGAGAAAATATCTAAAGAAACGAataaagaaaaggaaggaaaacaAACTAAAGCTGATAAGGAAAAAGAGCACGCAGTTGCGTCGGTCAATACCAAAATGGCTGCTGCTGGCAAGCAGTCCAGTGCAACAGTGCAAACAACTAGTTCACAAGACGCGAGTATATCTGCTGCATCCAAACCGAATCGTAAGAAAAATACAGCCGCTTCAATAACAGCGCCAAGTGTGCGCGAAGAAAAGCTAATACCACAGAAGTCAGTAACTTCACACACTTCAAATACAGCGCAAAAACGAACTCCAGTCTATAATCAGAAAGCTGCTCAGAAGCATATAGAATTGAAAGAAACCACCACAACCAGTCATAAGAAGAAGTCTCCGTTCTCGTACAATTTTGGCGCTTTTTCCGTAGAAAATGAAAAGTCTATCTATTCGTTTGATAAGGACGACGATGAAGAGGGTGCTAGTGCCAGCAAACCGCTCACGAAGCCAATATTTCGGCGACAGAGCCGACGTGATTCGCAACCCGATGATATCGGCTCCTCAACTCCTACACTTACACCTACACCGCGGTCACCACTAAAAAAACGTAGTGCCGCTTCCGTTGTACCCACGGAAAAGGCCCCGAAGGACGCCGCAAATGCATCACAGAGCAGTTCAGTTTCTCTAACATTAAGTCCTGCCGAGAACTGTAAGTTAGTGAAAGTTAGTCTTGAAGCAGAGCAACAGACTCCAGTTACATCCAAAGCCAAGTCGGGAAAACTTAAAAGCAAACTAAATACTCCATCAAAGCCAGCTGCAGAAGCCGCCCCCGATTCCGACTCTGACGGTCACACGTTCTATATACCATTACAAGGCACCGGCACTGGTGGTTCTGCGGAAGGTGGCATCCAAGGCGTAGCAGTTAAACTTGGACGTGAAGGCCCCGAAGGTCCGAATCAAAAGGTGATCATGCACGCGACACTAGTTACAAAAGCACAGATGGGACAGAATTCCAAACCGCTTCCAGATTCAATGAATGCGTCAGAGATCGTGAAAAATCTACTAATATCTACAGGTTCCTCCACTGCGGAAGCGACAAAAAAGTCAACATGTACATCTGCAGCAGTGGCAAGTACCTCGGCTGCCGCGGCGGTTAATTCAGCTTCGAACAGTTTAAAGAGCGTGCCGATTGGTACTGTTCAGCCACGTTTCAAGGGTACAGCAGATCCGGCTGctggaataacaacaacgacaactgCTCAACCCAGCACTTCAGCGGGTGGAAGTGGCTTGGTGCGAGTTAATTCCAACTCGTCGTTATTCTCGGGTTCCGCAAAATCCAGGCATGGTGCTGGTCCGACGGTTAACAGtggaagtaaaaaattaaaagatgaCACTCCAATAAAGATGTCAAATAACACAGCTTTTCCACGACATGATGATCCTACACAAATGGTCGAGGCACCCATTTTTAGGCCAACAGAAAAAGAGTTCTCAGATCCTATCGATTTCATTGAGCGCATCACACCGATAGCGGCGCGATTCGGTATTTGCAAGATCATACCGCCCCCAGTTTTTAAGCCAGAATGTCGCATCTCCGATGAAATGCGTTTTACCGCCTACAATCAATACGTGCACAAAATGTTGCATCGATGGGGACCGAGTGCCAAAGAGCTCAGCGCTATCAAGAAATATTTGGCGACACAAAGTATTGTCATGAATCATCCGCCCTGGATAGGCGGCATGGAAGTCGATTTGCCACGTTTGTACCACACAGTTCAGGAATTGGGTGGCCTGAAGGAGGTAATCGAGAAGAAGAAGTGGGCACGCGTCGCCGAGGAAATGTGCATTCCGAAACTGGCGCAGGATCGTGTGACCAAACTCGATGACATCTACTGTAAATACTTGCTGCCCTACGATACACTGTCGCCCACCGAACGTCAAAAACTGTTCGATGAGGTTGAGGCCGATTGGGCGAAACGTGAAGCTCGGGCCCGTCGAAATGCAGACCGTTTCGTGAATACGGAAAGCGTTTCGAACGAGGAGGATGATGTCTCCTCCGACGACGACGAAGAGTCCGAAGAGGAGGTGGACGGTGTCTCGATGGAGTGTATTGTAAAGGGCCGCAGCATGCCGCTTAGTCAATTTTATCGCATAGCGCGCAACACGATGACCTTGTGGTTTAAAAATACTGAACCTACTGTCAATGAAGTGGAAGCCGAGTTTTGGCGACATGTTGCCGTTCGCGACAGTCACGTTTGTGTACATTCCGGTTCCATAGATTCGTCTGGCTGGGGATACGGATTTCCAACACCAGGACCGAAAGGCAAAGGATCCAACTATGCCCGCCATCCCTGGAATCTGAAAGTACTTACAAACAATTCCGGATCTGTTTTGCGCTCACTTGGACCAGTTATGGGCGTTACAGTGCCTACGCTCCATGTAGGCATGCTTTTCTCGGCATGTTGCTGGTATCGCGATCCGCACGGACTCTCTTGGATTGAATATTTACACACAGGTGCCTCGAAGCTGTGGTATGGCATACCAGACGATCAAAGTGCCAACTTTCGATCAGCCCTCACTTCTCTCATTCCAACACACTGTCAGAACAAAACTATTTGGTTGCCTTGTGATACCGTTATGGTTCCACCTCATATGCTAACGGATCGCGGAGTGTCGCTCTGTAGAATCGAACAGAAGCCGGGTGAATTTATAGTCGTTTTTCCACGTGCGTACACTTCGAGCGTGGCCACCGGTTATGTGGTGTCGGAGAGTGTATATTTCGCCACAAATTCTTGGCTGGACTTGGCAAAACATGATTTTAGAGATATTCATGATAGTTGTGAACCGGCCATGTTTTCACTTGAACAGTTGCTCTTTGCATTGGGTTCAGATCAGCGTGTTGCATCGGATACTTTGCAACAAATGTTGCCCATGCTAAATGAAGTTTACGAAAAGGAAACTGCTGCAAGAGAACAGCTAAAAGCTGCTGGTGTAACATCAACGGAAAAGGTACCGAACGAGAAGGGTTCCAAATCGAAGAAGCAGCATGCGGTTAAATCGATAGAGAGTGAGTGTGATTTGTGTCGGGCGAATTTATACATTTCCATGGTAAGAACAGATGAGGGCAATGTATATTGCTTGCAGCATGCATTGAAGAATCTAAACAATGGGAACATTCAAGCAAAACAGTGTAAATTGATCTTCGCCTATAATATTGAAGATGTAGACAACCTTATAAAAAATCTCAACGATAAGATTCAACAGAAAAGAATTGgcaattctaataaaaaaggCAAGTAG
Protein Sequence
MVVSKDSKRKRKESPPPQAAVIESSPEMPKRTKVQAQRKFAQGQNAPSSSYTATLAASSSSTTGGPSASSESREPPTEILPNKRPKTEDFLTFLCFRGTSALPAHLDFLNQGKGEEALKVTEKKTIKTPSKIVKKTPMKKGRKAKASKALKTKAKAKARSVDEPVASTSAAAAAAAAKALLAAQTVTSTNSDKTVPPQTHANENSRYKKLVANDRSQKFGSTQEELKDTRSPTNNEVVEQKEQGNRRGRTVNEKSKIEEKTNKSPENKRRSNRTNIKEVRLLLETRENNKNDDDDYASANEATDQKAADFKDQEESSKKSKTPTQMSVHTSSTPTKEAESVSHSTVSKGKKGKAFAGKKTNAEHKDTEVVAVLKEASKESEKSEPQHLNKAKQPIKRPRQKESPIFIPSPEPTGRMTRQRAFFEPVKVLPTDCAEQMSVEKNGNEEIETPTEDTPEIKDKSKKINPEVGKRNGKNSELSKNSLTESKVEEKINSLNVFDFSSDDEQPLSKSIKLKKSPTSGSRKKISQAAKRKGKRMTPKKLQEISRDLVIDKKKEEMKIIEEEIKGDKKTSIQTEPSGEKNKRSGKMEKKKQTATESSSQNEANTEVQEEAGNEAPTPPLVKKTTSNIRQQRKINKPKSDITTSNGTAPNEKSLSGSPVRSQRPSRKTKEAAAIYMGIIGQKLQQNEDEDDDMSLNSFPDLPNVKEMEKMEIELKKNATSTTPPTTAKSPTKINAIAELEKQVGGRRGRPPKQGRPPPSQQPTTQPPAKREMEGMLVKKGALTKNISSNLQSDKDKDKQPELQDQNKDDSEDEDFLLNEEVNETKRKLEKSFSDSDDEPLAVKVNLKSSDKDLDNDSRKSDYDQPCNVSITLTTPPAGGKQSAPSSSTLVNAVPTKISTSTTVPQNVTASQTASLKTTDKKSSIPNSKSLNKPAGYNLPPTTQNSNAFISKMEHKLISPNLASSYLPPASPHYHARPSPHSTIQTAKSPTQPPPPSTKMTHISPPPPPPQSPMKYQTPPTTYPPPIEAYPSPKINPNFLTPKFDRSVLPRANNFPSPSPIKFDLSSTTPKSGGIQNCTLSPKTVLTLQTLPGGANTGQAHPSNPTTSAAAAAIASTAANASTSDPLKDEIGSILAANLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTEGYIGDQLSSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDMDDDYDDNLRPNLFATTPPPTRDDKESTSFSSSSKATRDLGKSESAWSGKGPSLKAIPVVASTSTKEDQTKNDCAVMQHPQTSTAGNETLQLGNVMTKGTATSKQHSNNVENKPSKEKLSDKKFDKKSRDEKISKETNKEKEGKQTKADKEKEHAVASVNTKMAAAGKQSSATVQTTSSQDASISAASKPNRKKNTAASITAPSVREEKLIPQKSVTSHTSNTAQKRTPVYNQKAAQKHIELKETTTTSHKKKSPFSYNFGAFSVENEKSIYSFDKDDDEEGASASKPLTKPIFRRQSRRDSQPDDIGSSTPTLTPTPRSPLKKRSAASVVPTEKAPKDAANASQSSSVSLTLSPAENCKLVKVSLEAEQQTPVTSKAKSGKLKSKLNTPSKPAAEAAPDSDSDGHTFYIPLQGTGTGGSAEGGIQGVAVKLGREGPEGPNQKVIMHATLVTKAQMGQNSKPLPDSMNASEIVKNLLISTGSSTAEATKKSTCTSAAVASTSAAAAVNSASNSLKSVPIGTVQPRFKGTADPAAGITTTTTAQPSTSAGGSGLVRVNSNSSLFSGSAKSRHGAGPTVNSGSKKLKDDTPIKMSNNTAFPRHDDPTQMVEAPIFRPTEKEFSDPIDFIERITPIAARFGICKIIPPPVFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPTERQKLFDEVEADWAKREARARRNADRFVNTESVSNEEDDVSSDDDEESEEEVDGVSMECIVKGRSMPLSQFYRIARNTMTLWFKNTEPTVNEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPTPGPKGKGSNYARHPWNLKVLTNNSGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRSALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSVATGYVVSESVYFATNSWLDLAKHDFRDIHDSCEPAMFSLEQLLFALGSDQRVASDTLQQMLPMLNEVYEKETAAREQLKAAGVTSTEKVPNEKGSKSKKQHAVKSIESECDLCRANLYISMVRTDEGNVYCLQHALKNLNNGNIQAKQCKLIFAYNIEDVDNLIKNLNDKIQQKRIGNSNKKGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-