Basic Information

Gene Symbol
nfxl1
Assembly
GCA_037464815.1
Location
JAZBGW010001665.1:1-7145[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.35 1.5e+03 -0.7 0.4 4 10 203 209 202 209 0.95
2 17 3.8e-07 0.0016 18.3 17.3 1 19 217 234 217 234 0.99
3 17 5.8e-10 2.5e-06 27.3 16.5 1 19 270 288 270 288 0.98
4 17 1.9e-07 0.0008 19.3 10.3 1 19 323 341 323 341 0.99
5 17 3.4 1.5e+04 -3.9 1.0 5 10 365 370 365 370 0.86
6 17 7.2e-07 0.0031 17.4 11.4 1 18 376 393 376 394 0.97
7 17 0.8 3.4e+03 -1.9 0.5 1 4 403 406 403 407 0.89
8 17 0.00043 1.9 8.6 15.6 1 18 428 445 428 446 0.94
9 17 7e-10 3e-06 27.1 10.8 1 18 455 472 455 473 0.97
10 17 1.9 8.1e+03 -3.1 1.1 5 10 501 506 501 506 0.94
11 17 0.00021 0.91 9.6 5.6 9 19 521 531 519 531 0.91
12 17 0.0086 37 4.4 5.6 1 12 541 551 541 551 0.90
13 17 4 1.7e+04 -5.2 3.5 14 19 579 584 579 584 0.86
14 17 0.92 4e+03 -2.1 1.2 6 10 610 614 609 614 0.85
15 17 0.00025 1.1 9.3 3.6 1 11 620 630 620 631 0.99
16 17 4.1e-05 0.18 11.8 18.6 4 19 662 677 660 677 0.93
17 17 1.8e-05 0.077 13.0 13.0 1 16 720 734 720 740 0.92

Sequence Information

Coding Sequence
ATGAATCAACAACAGAAACCACGGACTGCGTggaataaaattcaacaacaacaacaaccatcTGGTGGTAGGAATCGAGCCGgtaaacacaaaaatacaaatcCAACACCATCAgaattaaaattcaaagaagctcaaattaaattacaatcagCTGTTGAGAAGCATTTAAAAGATTACGAATCTTCATCATCTGAAGATGAATTGGAATCAGATAATCTTATCGatGGAATTATAAAGAACTATACACAAACTGGTGGTGTAGATGCGAATTTACAACGTACAAAAGCATTCCTACAGGACACTCTAATATCCGGTGCTGCAGTTTGTTTGATTTGCATTTCACGAATTAAACGTGACAATGCTaTTTGGAATTGTACCGAATGTTATTGTTTCTTCCATCTGGACTGTATACAAAAATGGTCGAAAGATTCAATGTTCCAACAGAAACAAATAATCGACAATTCTGTTAATATTAAACAGAAAACACTAACATGGGGCTGTCCGAAATGCCGTCACGATTATAAACTTACAGACATACCAGACAAATACTATTGTTTTTGTCGCAAAACAATAAATCCAAAATATCAACCATTATTGGTACCGCATTCATGCGGTGAAATTTGCCGTAAAGATTTGAAGCCTAAATGTGGACATCAGTGTTTATTGTTGTGTCATCCTGGTCCATGTCCACCGTGTCCAGTTACCGTTACTATCAGTTGTTATTGTGGTAAACAATCACCGAAAATCCAAAGATGTAGTAATAAAGAATGGTCGTGTGGTAGTCGTTGTGGAAAATTGTTGACTTGTGGTAAACATACATGTTCTGAACCATGTCATACTGGTGATTGTCCACCATGTTCAAAGAAAAGTTTACAGAAATGCTTATGTaagaatcaacaaaaattacgTGATTGTTCCTCGCCCATTTGGCAATGTGATAAAattTGTAGCAAGCCTTTAGATTGTGGTAATCataattgttcaattatttgtCATTCAGATGATTGTGATCCATGTCCATTAACATTACCAAGAACTTGTCCATGTGGTAAAACGAAATATCAACTTCCTTGTACTAAAGATACACCAACCTGTCCGGATACTTGCGGTAAATTATTGGATTGTGGTCAACATACTTGTAATCAACGATGTCATAAAGACGCTTGTGGTGTGtgcttagaaattgttgaaaaacgTTGTAGATGCGGCCAACATTCTAAACAAGTTAATTGTTATAAACCGTACTTTTGTGAAActaaatgtaaacaaattcgGGATTGTAATCGACATCCTTGTAATAGAAAGTGTTGTGATGGTAATTGTTCACCATGTGAAAAGCCGTGCGGTCGTACATTGAATTGTGGTAACCATAAATGTAATTCTGTATGCCATCGTGGACTTTGTTATCCATGTAATCAAACTGAAACTGTAACCTGTCGATGTGGTGCTACAAAACTGACAGTTTCGTGTGGACGAAAGAATCGTACAAAACCACCGAAATGCAGTAAACTTTGTTTgaTTCCACCTGATTGCCATCATGAGAAACGAGAAGCCCATAAATGTCATTTTGGTGATTGTCCACCGTGTCGACAAATCTGCAATAAGTCAAGATCGACTTGTTCACATTCATGTACGGCTGTTTGTCATTCGGtagtttttgttaaaatagaaGGACAGAAAGCTTCAATGCCATGGGAACAAACTGGACCGCAAATTGAGCGGAAATCCTTACCTTGTCCGGATTGTAAAGTTCCTGTACCAGTTACGTGTTTGgGTGGGCATGAAACTTCCAACTGGCCGTGTTATATGGCGAAACCTTCCAGCTGCCAAAGGCCTTGTGGTAGACTTCTAGATTGCGGAAATCACATTTGTACGCTACCTTGTCATTTTGTAGAAGATGCTCCAGATGAAACCCGGGCTGGGAAAAACTGTGAAATTTCTGAAGGAGGTTGTACTAAGGAACGTCCAGAAGGTTGTCCACATGATTGTCTGAAACCATGCCATCCTGGTCCTTGTCCACCATGCAAACAGATGATTCGAATTCAGTGCCATTGCGGCCTTAATCAACCGTACATTCCCTGTTATCAATGGTTAGATCTAGAGAAACGTGAAGAAATCCAAAGTTGCGGCAGTCAATGTcctaaaaatTTTGATTGCGGTCATCGTTGTCGGGCTAATTGCCATCCCGGTCCATGCCCTAATCCGGAATTGTGtaagaaaaaagtgaaaatctCATGTAAATGTAAACGGATCAAAAAAGAATTCCCATGTGACATTGTacgtaatagtaataatgtaACAGTTGATTGTGATGAGATTTGTAAACGGAAATTAGAAGAACAACGAAAAGAATTGGAAGCtataaatgaacaaaaacGACGTGAAGAAGagatcaaaaatcaaaaagaatTAGAGAAATATCAAAAGATATTCGAAGGTAAGAAGAAGAATCGTGATCGGCGCGTTTACAaagaagaacaacaacaaaAAATGGATAATAAAGATTTGTATGTTATCGGAGCTGaatttaaagaattaaaaTACGATGGGTTCTTGGATTGGTTTGTTCGTTTCTCCGATATCGGTATCCATTGGAAAAATCAGCCGACTTATCTAATTTCCCAATTTGCTTTCCTTGTAGGCGGTATTCTGACACTACTCCATGCACTAATAAGAGGTGGACGTTTGCCTTATTTATGGCTCGCTATTTTCATCCATGGCATTGTGATAGAATGTATGTGTTTCATTTTACCGgacattgataattattggcATTCCCAAACGCCGGCAATCTTTATCGGTCGAAGATTACCATTACACATCATGCTGTTATatccatgttttaattatcaatcCTCGATTGCTGTGGCCAAGATGAGATTACCGGATTGGGCTGAGCCGTTCGCTGTCGCTTTAGGGTCAGTTCTAATCGATATCCCTTATGATATCATTTGTGTTAATTTCCTACATTGGACTTGGCACGATACCGATCCAAATATTGGTGATCGCCACTATTGGactCTTCAAAAACGGAAATATTTATGTCCGACTGATTACGACGAAAAGTATTTCGATTGGCATTGTCTACCAAATGGTAAACCACCATCGGATGGGTCGTACTGGTATACAGCATGTGGTGTACCACTACCAAATCGAGCTGAATTCATCGTTATAACTGGTTTGATTTGTATTCTTGCAACTGTTGTTTTCGTAATTGGCAATAAATGGGAAGCGTATTTAGGTTTATTACAAGCTGAATATACAGAAGGTGATGCTTTAGATGCATTAGGATTGAAACGGTATTGCTGTAGAAGAATGCTGCTTGGACATGTTGATCTTATcgagaaattattaaattatgctCCATTAGAAAA
Protein Sequence
MNQQQKPRTAWNKIQQQQQPSGGRNRAGKHKNTNPTPSELKFKEAQIKLQSAVEKHLKDYESSSSEDELESDNLIDGIIKNYTQTGGVDANLQRTKAFLQDTLISGAAVCLICISRIKRDNAIWNCTECYCFFHLDCIQKWSKDSMFQQKQIIDNSVNIKQKTLTWGCPKCRHDYKLTDIPDKYYCFCRKTINPKYQPLLVPHSCGEICRKDLKPKCGHQCLLLCHPGPCPPCPVTVTISCYCGKQSPKIQRCSNKEWSCGSRCGKLLTCGKHTCSEPCHTGDCPPCSKKSLQKCLCKNQQKLRDCSSPIWQCDKICSKPLDCGNHNCSIICHSDDCDPCPLTLPRTCPCGKTKYQLPCTKDTPTCPDTCGKLLDCGQHTCNQRCHKDACGVCLEIVEKRCRCGQHSKQVNCYKPYFCETKCKQIRDCNRHPCNRKCCDGNCSPCEKPCGRTLNCGNHKCNSVCHRGLCYPCNQTETVTCRCGATKLTVSCGRKNRTKPPKCSKLCLIPPDCHHEKREAHKCHFGDCPPCRQICNKSRSTCSHSCTAVCHSVVFVKIEGQKASMPWEQTGPQIERKSLPCPDCKVPVPVTCLGGHETSNWPCYMAKPSSCQRPCGRLLDCGNHICTLPCHFVEDAPDETRAGKNCEISEGGCTKERPEGCPHDCLKPCHPGPCPPCKQMIRIQCHCGLNQPYIPCYQWLDLEKREEIQSCGSQCPKNFDCGHRCRANCHPGPCPNPELCKKKVKISCKCKRIKKEFPCDIVRNSNNVTVDCDEICKRKLEEQRKELEAINEQKRREEEIKNQKELEKYQKIFEGKKKNRDRRVYKEEQQQKMDNKDLYVIGAEFKELKYDGFLDWFVRFSDIGIHWKNQPTYLISQFAFLVGGILTLLHALIRGGRLPYLWLAIFIHGIVIECMCFILPDIDNYWHSQTPAIFIGRRLPLHIMLLYPCFNYQSSIAVAKMRLPDWAEPFAVALGSVLIDIPYDIICVNFLHWTWHDTDPNIGDRHYWTLQKRKYLCPTDYDEKYFDWHCLPNGKPPSDGSYWYTACGVPLPNRAEFIVITGLICILATVVFVIGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLLNYAPLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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