Basic Information

Insect: Mylabris variabilis
Gene Symbol: ci
Assembly: GCA_037464815.1
Location: JAZBGW010000264.1:22660-31126[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.023 1.4 9.5 0.7 3 23 223 245 221 245 0.94

2 5 0.15 8.7 7.0 0.1 3 23 255 280 253 280 0.79

3 5 0.0002 0.012 16.0 2.0 1 23 286 310 286 310 0.97

4 5 0.00032 0.019 15.4 0.4 1 23 316 341 316 341 0.97

5 5 7.4e-06 0.00044 20.5 0.3 1 23 347 372 347 372 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.023	1.4	9.5	0.7	3	23	223	245	221	245	0.94
2	5	0.15	8.7	7.0	0.1	3	23	255	280	253	280	0.79
3	5	0.0002	0.012	16.0	2.0	1	23	286	310	286	310	0.97
4	5	0.00032	0.019	15.4	0.4	1	23	316	341	316	341	0.97
5	5	7.4e-06	0.00044	20.5	0.3	1	23	347	372	347	372	0.97

Sequence Information

Coding Sequence: TTGGGTTTATCGTCCGAATACCTCAGTGCTCGAGGTCTCTCCGAATTGCACCCTTCATCAACCCTAGCAAGCAGCGAATTCCCTTTCAGTATAGAtgGTTCACGGCTAAACAGTCCCCGTCCTGGTAGTATCCGACAATCACGTAAACGTGCCTTATCCTCATCACCATATTCAGATTCATTCGATATAAATTCAATGATACGTTTCTCACCGAATAGTTTAGCATCAATCGTGAATGGTTCGCGGTCATCAAGTGCTAGCGGTTCTTATGGTCATTTATCAGCCGGTGCAATTAGTCCAGCATTTAATGTGCATCCAGAAATGCATTTGCAACAGCTTCAGGCGCATTTAATGCGCAGTGCTGGATCGTTATTACCATTACCGCCAACAGCACCACCGCATACTATGTATTCGTTAGGCCATCATCCGCTTCATATGTCTTCATCACAGAACATTATAAAGACTGATGCTTTAAATGATAGAAAGAAACCGGAGAGTACGACTGCTAATCATATGGATGTGGATGTGAATgctagaaaattaaaaattaagaaagaaCCGCCAAGTAATACAAGTGGTGGTAATAGTGGAAGTAGTACGGTAAATGAAACCCCAAACGATGGTACTGATCTCAAAGATGAACCtggtgattttattgaaacgaaTTGTCATTGGAAAGATTGCGCTACAGAATTTCAAACACAAGATGAACTAGTTAAACATATCAACGATCATATACAGGCGAATAAAAAGTCGTTTGTATGCCGATGGGAAGGTTGTTCAAGAGCTGAAAAACCATTTAAAGCCCAATATATGTTGGTAGTGCATATGCGGCGACATACCGGCGAGAAACCGCACAAATGCACGTTCGAGGGATGCGTTAAAGCCTATTCTAGATTGgagaatttaaaaacacatctACGATCACACACTGGCGAAAAACCTTACACTTGCGAATATCCTGGATGTTCGAAAGCTTTCAGTAACGCTTCTGATCGAGCTAAACACCAAAATCGAACGCACAGCAACGAGAAACCGTATGTATGTAAAGCGCCTGGTTGTACAAAACGTTACACTGATCCAAGTTCCTTAAGGAAACACGTAAAGACGGTTCATGGTACAGATTTTTATGCGAAAAAGAAACATAAAGGCAACGATAAAGGACCAGATGACGGTCCGGCCGGTATTGATTCAAGTCCAAGAAGTGAAGATATGCAAAGTCATAAAACTGCAAGTTTAAGTAGTCCAAGTATTAAATCGGAATCGGATCTTAATTCACCTGGACAACAACAGCAAGGCAGTCCATTAGGAGCGACACAATTAACAAATGGTTGTCATGATGACTTCCAAGGGGATTTAAATgcgacgacaacaacaacaacaacagctacAACCACAACAACGGCGACTGTACAACGAACGGCTCCTATTGAAGATCCTAGTTGGGCTTATGAGGCTGAAGATCTTGAAATTGATTATTTGCCGGAAGTTTTACGGGAAATGGTTGGAAttgggggtggtggtggtggtgatcgGGGTGGTGTTTCAATAGGTGAACGACCACGTGTACGAATAAAATCTCGTATTCCAACTAAACCAATCACGAGTTCTACATCACGTAAAAATATCGGTATTACTGATCTAAATAAACGGATAAATGATTTGAAAATGGAAAGTggtattacaacaacaacgacaacaacaacagtagcAACAACACCTACACAAATTAATAGTGGACCTCATTCCAACAAACCGcaatttgttgatttacaaCAACGTCTACAACCACCGTCCAATAACACAAATATCTCAGTTCAAATTAGAAGAGATAGTAATTCAACAGTTAGTTCATATTATGGCAGTATGCGTAGTACGGATGCTAGTCGAAAGAGTAGTTTAGCATCTCAAGCATCTAGTATGAGGCCTATTATGACAACAGGATCGTTTTATGACCCAATATCGGCTGGTAGTTCACGAAGATCCAGTCAATTATCGACAGTTACCACGAACGGTGGTGGTGTTGCTGTTTGTataccaccatcaccaccatctCATCTGCTTGCTGGACAACTGcagaaattacaaaatgttCCAAACAAGATCAACGAAGGCAACGAGAATCTCGTTCTTCAGACACAGAATGCTGCTTTACAACAGACAGCTATTCAGCAAACATGGATGACTGGTAATCTTCCATTGggcaatatttcaacaaattcgGACAATCGACGAATGTCCGAACCTTGTCACACATTAACCGATCGAAAGAGTCCACCACCACGACCAGCATCTGTTAGTCTATCACCATTAAAAGGCACAGTAAATTCATCCGAATTACATCCAAATCAAGCTGTTATATTGGATGAAGTTGGTGAAGGTGAAATGgttgaaaataaattggtAATACCCGATGAGATGGtgcattatttaaatcaaGTTGCTGACAATCAAAATAACGAATTTTCAACGGCGATGAGTTGGTCGGAAACAGTCACAtcacaacaagaacaacaacaacaagcacAAAAGCCATTAACACGACCAACAACCGATTTAGGACCACAAATACTACCACCATCACCTTCAAGTCAAGTATTATCGCCACAGAGTACGTctacaataaatcaaattatgcCGTCACCGGGTAGTGTTGTTCAAATGAAACCATCACCAGTTGGTGCAAATTTAGCACAAATGGTACCATCACCAGGCAATATTAGtttaaatcaatataataataataataataataataatagttttaatcaaatgaTGCCATCGCCGGCATCTAATTACGGTCAAATTACGAATCCTATGCCATCACCGTCACCTAGTTTAACACAAATGGTACCATCGCCGGTGTCAAATATTAGCAATCAAATGGTACCATCACCGATACGATGCCATTCGCAAATGTTATCACCGAATGTTAATCACCatcaaattgtacaaaattgtaatattatacaaaataatcaattacaacaccaccatcatcaacaacaacaacaacagaatcaGTGTTATAATCGACAAGTGTGTTATAATGTACAACATGGAATTATGTGGGATAATTCACAGAATCGGCAATGTCATCAGACTATAATgaaccatcatcatcaacaaccaACTATGCCTTTaagtcaacaacaacaacaacaaatttgtaataatggtATGGATAATACAAACGATTATTGTCGCCAACAACAGacattacaaaataattacattacGCCAACATCACAATGTTCAAATCATAATTATCAAATGTGTAATATGAATGGTTAtataacaacaccaacaaataATGGTTGTACATCGGCAGCAATTACGAAAACAccaaacaattacaattgcagtaataataacaataataataataataatacaaatgtGTATTATCCATCAATACAAAGTCCATCATATAATTGCATACAGAATGTAAACGAACCGTTACCATCACCGGCAATGGCAACACCAGCACCGCCAGAAATGATGAATCATCCACAACAAGCGCAAATGAGTCGACCATGTACCCATCATTATAATCAAACGTGttttcatcatcaacaacaaccaccagcGTATACAACACAATGTCTACCACCAACACAAgtaaatcaacaaacaaattgtaattgtaattgcCGTAAAACTGTTGTTTATAATCAACCACagaaatgttttaataatcaacaacgtagtactacaacaacaacaaataataataataatgatgaaatacAATGTAAAGATATCAGCCAGTCACAGATGTCACCTGGTATTATTAATCAACCGATCCAACAaggtaatattaataatataacgAATGGAATGCGTCAAGATACATATCAGAGAACATTAGAATATGTACAGAATTGTCAATCGTGGGTAACGAATCCTGAAACTGTAACCAGTAGTACACatccaattaataataaaaataataataataataataagtgttCAGAATCTACAAATATGATTGTTAATGATATGACATCATCGCTCAGTTCCTTGTTAGAAGAGAATCGATATTTACAAATGATacaatag
Protein Sequence: LGLSSEYLSARGLSELHPSSTLASSEFPFSIDGSRLNSPRPGSIRQSRKRALSSSPYSDSFDINSMIRFSPNSLASIVNGSRSSSASGSYGHLSAGAISPAFNVHPEMHLQQLQAHLMRSAGSLLPLPPTAPPHTMYSLGHHPLHMSSSQNIIKTDALNDRKKPESTTANHMDVDVNARKLKIKKEPPSNTSGGNSGSSTVNETPNDGTDLKDEPGDFIETNCHWKDCATEFQTQDELVKHINDHIQANKKSFVCRWEGCSRAEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCVKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGTDFYAKKKHKGNDKGPDDGPAGIDSSPRSEDMQSHKTASLSSPSIKSESDLNSPGQQQQGSPLGATQLTNGCHDDFQGDLNATTTTTTTATTTTTATVQRTAPIEDPSWAYEAEDLEIDYLPEVLREMVGIGGGGGGDRGGVSIGERPRVRIKSRIPTKPITSSTSRKNIGITDLNKRINDLKMESGITTTTTTTTVATTPTQINSGPHSNKPQFVDLQQRLQPPSNNTNISVQIRRDSNSTVSSYYGSMRSTDASRKSSLASQASSMRPIMTTGSFYDPISAGSSRRSSQLSTVTTNGGGVAVCIPPSPPSHLLAGQLQKLQNVPNKINEGNENLVLQTQNAALQQTAIQQTWMTGNLPLGNISTNSDNRRMSEPCHTLTDRKSPPPRPASVSLSPLKGTVNSSELHPNQAVILDEVGEGEMVENKLVIPDEMVHYLNQVADNQNNEFSTAMSWSETVTSQQEQQQQAQKPLTRPTTDLGPQILPPSPSSQVLSPQSTSTINQIMPSPGSVVQMKPSPVGANLAQMVPSPGNISLNQYNNNNNNNNSFNQMMPSPASNYGQITNPMPSPSPSLTQMVPSPVSNISNQMVPSPIRCHSQMLSPNVNHHQIVQNCNIIQNNQLQHHHHQQQQQQNQCYNRQVCYNVQHGIMWDNSQNRQCHQTIMNHHHQQPTMPLSQQQQQQICNNGMDNTNDYCRQQQTLQNNYITPTSQCSNHNYQMCNMNGYITTPTNNGCTSAAITKTPNNYNCSNNNNNNNNNTNVYYPSIQSPSYNCIQNVNEPLPSPAMATPAPPEMMNHPQQAQMSRPCTHHYNQTCFHHQQQPPAYTTQCLPPTQVNQQTNCNCNCRKTVVYNQPQKCFNNQQRSTTTTTNNNNNDEIQCKDISQSQMSPGIINQPIQQGNINNITNGMRQDTYQRTLEYVQNCQSWVTNPETVTSSTHPINNKNNNNNNKCSESTNMIVNDMTSSLSSLLEENRYLQMIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00987436;
90% Identity: iTF_00814666;
80% Identity: -