Basic Information

Insect: Mylabris variabilis
Gene Symbol: -
Assembly: GCA_037464815.1
Location: JAZBGW010010782.1:1160-2165[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00022 0.013 15.9 4.1 3 23 120 140 119 140 0.98

2 7 3.6e-07 2.2e-05 24.6 2.0 1 23 146 168 146 168 0.97

3 7 1.7e-05 0.001 19.3 4.5 1 23 175 197 175 197 0.99

4 7 2e-06 0.00012 22.3 1.6 1 23 203 225 203 225 0.97

5 7 8.1e-05 0.0048 17.2 6.0 1 23 231 254 231 254 0.97

6 7 0.0046 0.28 11.7 2.8 1 23 260 282 260 282 0.97

7 7 2.4e-06 0.00014 22.1 1.3 1 23 288 311 288 311 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00022	0.013	15.9	4.1	3	23	120	140	119	140	0.98
2	7	3.6e-07	2.2e-05	24.6	2.0	1	23	146	168	146	168	0.97
3	7	1.7e-05	0.001	19.3	4.5	1	23	175	197	175	197	0.99
4	7	2e-06	0.00012	22.3	1.6	1	23	203	225	203	225	0.97
5	7	8.1e-05	0.0048	17.2	6.0	1	23	231	254	231	254	0.97
6	7	0.0046	0.28	11.7	2.8	1	23	260	282	260	282	0.97
7	7	2.4e-06	0.00014	22.1	1.3	1	23	288	311	288	311	0.97

Sequence Information

Coding Sequence: ATGGATTTGTGCCGTTTGTGTTCGATGGAAATTCCACAAAATTTCTGTAAATCGATATTTCAAGACGATGATATAAAAATCATAGAAATTATTGGCAATCTAACCGGATTAAGTATAGTGGAAGATGACCGTTTACCGAAATTTGTATGTTTTTACTGttatgaaaaattgataaatttcaataaattccgTGAATCCATCTTACAAAACGAATTGAATTTCcatcaaaaattacaacaaacttACGATAATTCAATAGAGAATACGACTATTGAAAAcacatttgataattttgataatatagaACAGATCGAGATTAAGATCGTTGAAGAAATAGCAGATGATTGCATCCTTTTATGTAATGTTTGTGGTAAAAGTTTTCGTTGTAAATCGACGTTTAATCGTCATATTGATCGACATATGAACACAGCACGTTACCAATGCGAGATTTGTGGTAAACATTTCGTTTATTCGTCCAGTTTAAAGAAACATTCATTGATCCATAATCGTATAAGAAAGCCGTATCAATGTTGTGAATGTAATAGAACGTTTGCATATAAAGAAACGTTAATTCAACATAAACGCAGACATACAGGCGAGAAACCGTTCATTTGCGATATTTGCGGCCGTCGATTTGCACAACATTCACATCTATCCGATCATATTTTATTGCATAACGGACGGAAACCGTTTATTTGTACGATTTGTAATTGTTCATTCCGACATCGGACTAGtttaaaattacatataaataaacaacattacGGCGagaaaacatttatttgtaatGTTTGTTGTAAAGGTTTCTATCTGCAAACAACATTAAATcgacatttaaaaatacataatgAACAGAAACCGTACGTTTGTCAGATTTGTAATAAAGGATTTactaaaaaaacatatttacaaacacatttaattaaattacataataaataa
Protein Sequence: MDLCRLCSMEIPQNFCKSIFQDDDIKIIEIIGNLTGLSIVEDDRLPKFVCFYCYEKLINFNKFRESILQNELNFHQKLQQTYDNSIENTTIENTFDNFDNIEQIEIKIVEEIADDCILLCNVCGKSFRCKSTFNRHIDRHMNTARYQCEICGKHFVYSSSLKKHSLIHNRIRKPYQCCECNRTFAYKETLIQHKRRHTGEKPFICDICGRRFAQHSHLSDHILLHNGRKPFICTICNCSFRHRTSLKLHINKQHYGEKTFICNVCCKGFYLQTTLNRHLKIHNEQKPYVCQICNKGFTKKTYLQTHLIKLHNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -