Mvar007085.1
Basic Information
- Insect
- Mylabris variabilis
- Gene Symbol
- Prdm15
- Assembly
- GCA_037464815.1
- Location
- JAZBGW010003376.1:3285-8025[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.7 2.8e+02 2.2 0.3 3 23 209 229 208 229 0.93 2 12 1.4e-05 0.00086 19.6 0.9 2 23 237 259 236 259 0.96 3 12 0.0018 0.11 13.0 0.9 1 23 369 391 369 391 0.98 4 12 0.0044 0.26 11.8 5.0 1 21 395 415 395 416 0.93 5 12 0.0012 0.072 13.5 1.8 1 23 421 446 421 446 0.97 6 12 2.8 1.7e+02 2.9 4.4 1 19 450 468 450 470 0.95 7 12 3.6e-07 2.1e-05 24.6 1.8 1 23 481 503 481 503 0.98 8 12 0.031 1.9 9.1 0.2 3 23 524 544 522 544 0.97 9 12 0.00019 0.011 16.1 2.8 1 23 549 571 549 571 0.98 10 12 2.5e-05 0.0015 18.8 1.1 1 23 577 599 577 599 0.96 11 12 6.2e-06 0.00037 20.7 3.7 2 23 605 627 604 627 0.96 12 12 6.8e-05 0.004 17.5 0.7 1 23 637 660 637 660 0.97
Sequence Information
- Coding Sequence
- atgaatCAACAATGCAATATTTGTGGTGAAATTCATAATTCTGCCaattgtacaataattaaaataacaaattatGTATGTGATAATGTGATTCCATCACGAGCTAAATTAAGTTTAccaaattttctacaattacaattactcACAGATGGTTcttatacaataataacaaagcAACATATAGAAAAGGGTACAAAATTTGGTCCAATTGTAGCGAGAAAAGTTGATCAAATCAATCCATCAGTAGATTTTCCATTAAAGATTTTCTCAcaacaagaaaacaataatgttGTTGAATATTATTTAGATACAACAAATGAGAATGAGTGTAACTGGTTGATATTTGTGTTAGCAGCTGAATTTCTCGAagatcaaaatttgatttgttatcaAGAAGATACCGATATTTATTACGTTAGTATAAAAGATATTGAACCAAATGAACCGTTAAAAGTATGGTATTCACCGTTCTATGCaaagaaaatgaataaaaatatgttAGTATCGTCgacattattaaaaaataccgATTTTGATTTGCaatcaacaatacaattaaaaaatatcgatttgaATAGTTTGgtgaagaaacaacaaaacatcGTTGAAAAGAAGCAATGGTTatgtaaattttgcaataaaattgataaagataTTGTGTCATTTGCGAAACATTTGATTGTACATTATCGTTtacaattgaagaaaatgtGCGACATCTGTAAACAGACATTCAACTCTAAAAAGaatttagcaaatcatttaaaagttgttcATTATTCTGAAAATTCTCTAATAAATGACGATCAAAGAACAaatctattatcattatcgtcaacatcatcatcattaaaatcaataactaAAGATCAATCAGTTGGTGGTCCATTATTGTATGATATATTTACAGATAGTAgtgatttacaacaatttgatATAGATACagcaattaataataatcaaaatttattggatgatgatattgagaatttattattaactgaTGAAGTAgagaattttcaacattttaatttcaatataatcgacgagaaacaacaacaacaacaagacaaACAACATAAATCTAAtgataaacaacaagaatacGAGTGTGACGTatgtttgaaaaaattcaagaaaatccgtctattattaatacatttaaaacaacatacaGGTGAATATTTATGTACGAAATGCTTGAAGATTTTCTGCCGTAAAGAGAATTTAACAACACATCTATGTAATTGTGAGAAATTCTATCAGTGTGATTTGtgtaatgataataagaaattcacacaaatgaaatatttaaaacgacacatattaataaaacataaattacgttatttttgtaatttatgtaaaaataattattattcaaaatatgaattatcacaacataattgttgtaatgtatcgaatttatttaaagagaAATTCATATGTACGATATGTGATAAAGTCTTCTATCGACAGATCTATTTAAAGAAACATTTAAAGACACATTTagcgaaaaataataaacaattgcatcgtaatacaataacaacaaataattctacAATATGTGAAATATGTggtattttattagaaaataaaaattcattatatttacatttaaagaAACATAATGAACCGAAATATAGTTGTCAGATTTGTTCGAAAAAATTCCATCGAATTGATTCGTTGAAAGTACACGAAAATACACATAAAGAAACAAGCAAGttTGAGTGTAATTTGTGTTTGAAGAAGTTCAATAGACCTTCAACGTTACAAGAACATATGGATTTTCATAATGGAAAATTGGTGACATGCAAATATTGTGGAATACAGTTTAAACATCGCAGtacattaaataaacatataaaaagtaaacataataatacgaaaattcagttgaaatatttttcgtgtCCACTATgtgataaacaaattaaattgaagaGTTCGTTATTGAGACATCTTCGTAAAATACATCcaaatgattataaaaatgtcGATTTAACAAATGTAGAAGCGAAGATATTAACAAagaataattatgaaaatattgataatacgGTAGTTGGAGAATTCAAGAAGAAACAAGATGATGttgttattgaaaatgaagatgatggtggtgataaAAAGAAGGAAGTTTGCCTATCAATTCCGGATTTGAGTGAAAAAGATCAAGAAATCACTTTAGatAATAATGCCTACATTTTAGATAATGGTACAATTATTCAGCCACAATTGAATTCGGACAACGTAATAATTTACGTTCTAAATCAGCCATTTTAA
- Protein Sequence
- MNQQCNICGEIHNSANCTIIKITNYVCDNVIPSRAKLSLPNFLQLQLLTDGSYTIITKQHIEKGTKFGPIVARKVDQINPSVDFPLKIFSQQENNNVVEYYLDTTNENECNWLIFVLAAEFLEDQNLICYQEDTDIYYVSIKDIEPNEPLKVWYSPFYAKKMNKNMLVSSTLLKNTDFDLQSTIQLKNIDLNSLVKKQQNIVEKKQWLCKFCNKIDKDIVSFAKHLIVHYRLQLKKMCDICKQTFNSKKNLANHLKVVHYSENSLINDDQRTNLLSLSSTSSSLKSITKDQSVGGPLLYDIFTDSSDLQQFDIDTAINNNQNLLDDDIENLLLTDEVENFQHFNFNIIDEKQQQQQDKQHKSNDKQQEYECDVCLKKFKKIRLLLIHLKQHTGEYLCTKCLKIFCRKENLTTHLCNCEKFYQCDLCNDNKKFTQMKYLKRHILIKHKLRYFCNLCKNNYYSKYELSQHNCCNVSNLFKEKFICTICDKVFYRQIYLKKHLKTHLAKNNKQLHRNTITTNNSTICEICGILLENKNSLYLHLKKHNEPKYSCQICSKKFHRIDSLKVHENTHKETSKFECNLCLKKFNRPSTLQEHMDFHNGKLVTCKYCGIQFKHRSTLNKHIKSKHNNTKIQLKYFSCPLCDKQIKLKSSLLRHLRKIHPNDYKNVDLTNVEAKILTKNNYENIDNTVVGEFKKKQDDVVIENEDDGGDKKKEVCLSIPDLSEKDQEITLDNNAYILDNGTIIQPQLNSDNVIIYVLNQPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -