Mvar006433.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mylabris variabilis
Gene Symbol
salm
Assembly
GCA_037464815.1
Location
JAZBGW010002785.1:3158-9317[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 4 2.4e+02 2.5 0.2 3 19 2 18 1 20 0.91
2 10 5.3e-06 0.00032 21.0 0.9 1 23 350 372 350 372 0.98
3 10 7.2e-06 0.00043 20.5 1.9 1 23 378 400 378 400 0.98
4 10 0.066 3.9 8.1 3.8 2 23 718 739 717 739 0.98
5 10 4.5e-08 2.7e-06 27.5 0.6 1 23 745 767 745 767 0.97
6 10 6.3e-05 0.0038 17.6 2.6 1 23 777 799 777 799 0.98
7 10 0.0096 0.57 10.7 2.4 2 23 1059 1080 1058 1080 0.97
8 10 0.043 2.5 8.7 1.0 1 14 1086 1099 1086 1100 0.93
9 10 1.5e-06 8.7e-05 22.7 4.0 3 23 1275 1295 1273 1295 0.96
10 10 2.1e-07 1.2e-05 25.4 0.9 1 23 1301 1323 1301 1323 0.98

Sequence Information

Coding Sequence
ATGTGCCAGCGTTGTCAAGAACAGTTCACTGACGTTCAAGAATATTTAACACACAAAGCTGAATGCGAAAAGAAGGCCATCAAACATGATGATCCTGCCCATTCAGATCCTGAAGATATGGTCGTTTCAGAggaggatgatgatgatgatgatgagactAGTAATGGTAAACGTTTGGAAAGGATGCGACGACAGCGACAAGATGttgcaaataataataatagtattgatGAGAATTCACCAGATGATAATCCACGATTGGCTTTCCCATTTCCTATACCTTCTGCAACAGGTCATGTCACATTAGAAGCACTACAAAACACCAAAGTAGCTGTAGCACAATTTGCTGCTACAGCAATGGCAAATAATGCTGACAATGAAGCAGCTTTACAAGAATTGGCTGTTTTACAATCGACACTTTTTACGTTACAACATCAACAAGTGCTTCAATTACAATTGATAAaccaattacaacaacagttGCAAATTGATCGTACAAAGGTGGATAGTCCTGTATCACCGCCACCATCAGAGAATGAAGGTGAATGTGCACCGACTGAAGCTTCACCGCCACCACAAAATTTACCAATCTCAAGGGAAAATACACCTGCGCCAGTACTACCGCCACCAAttagttgtagtagtagtaatagtaataataataatagtaatattacAAGTTGTAtgactactattactactacccCTCAACCCCCGCCAATTCCAGCAAGTCAAGAAATAGAAACTCCAGTTAGCAATGAAGTCACAATACCACCACCTAGTACGACAACAGCATCTATGATCTCTTCACAACATTGTTCGATTTCATCATCATTAGCTTCAACGATTATTACGCATAATAATGAACCACCATCATTAGACGAACCAAATACTTTAGAAATGTTACAGAAAAGAGCACAAGAAGTCTTGGACAATGCCAGTCAAGGATTATTAGCGACGAATTTAGCCGATGAATTGgcatttagaaaaaacaaaggTAGTGTGTCACCGTACGATTCTAAAGGTCGAAATGAGCCGTTCTTTAAACATCGGTGTCGGTATTGTGGTAAAGTGTTTGGTTCAGATTCAGCCCTTCAAATACATATCCGATCTCACACGGGCGAACGCCCATACAAGTGCAATGTTTGCGGTAGTCGATTTACGACTAAAGGCAATTTAAAAGTACATTTTCAAAGACATAGTGCAAAATTTCCTCATATCAAAATGAATCCAAATCCAGTTCCTGAACATTTGGATAAATATCATCCACCATTGTTGGCACAATTGGGTCAACAGCCAGCTTTATCGCCTGGCGGACCGCCACATCCACCTCATTTAGGTGGTTTTCCAAGTGGTCCACCATTTCCACCAACCAATCTACCGTTATATAGGCCGCATGggccaccaccaccgccacctgAATTAATTAGTGCAAGATTACAACCATCCCCGCATAGGTTACAAGAACCGAATCAAAGAATCTTTCAACCGCATACGATGTTTATGAAAAGGGAAGAACAAGAATTACCAGAAAATTTAAGTAAACCACCTAGATCTCCGACGCCAGTCCACGAATCGCCACAGTGTAAACAGGAGACTCCTGAAGAAACTCCAAGGAAAGACTTTAACGACGAATTACGATCGACCACGAATGTTCCACAATTGACACCAAAACAAGAACCAAATGATGATGTTGAAGGCGAACAAGAGCACGAACGATACCATCCATCTCCGACTCCTTATGATGAATGCAGTATTGATAGTAAATATAGTAATGAGGATATATTAAGGCAGAGTCCTAATGGTGATCAATCTGAGCAGATGCAAGATGAGCCTGAGAACTTGTCAAATAAAAGTAATTCCATTAATGTTCCGTTAAGTATTTCTACCGGTCAGAGATTGCCTGCGAATTTTTCATTTGGCCAAGTCGGTTCACCTCCAAGCAGTACATCGTCCGGTAGTTTAGGTCCATTCTCATCGACTCCCATTGTTGATCCAGCAAAAGATCCAGCAATTTATTCGAATTTGCTGCCACGACCCGGTAGCAATGATAATTCCTGGGAAAGTTTAATAGAAGTGACTAAAACATCAGAAACTAGCAAACTACAACAATTAgttgataatattgaacataAACTATCCGATCCAAATCAGTGTGTTATATGTCATAGGGTGTTGTCGTGTAAAAGCGCTTTGCAAATGCATTATCGAACTCATACAGGCGAACGGccttttaaatgtaaaatctGTGGTCGTGCATTCACTACTAAAGGTAATTTAAAGACGCACATGGGTGTACATCGGGCGAAGCCACCAATGCGTGTATTACACCAATGTCCAGTTTGCCATAAAAAATTCACAAACGCCCTAGTTCTCCAACAACATATTCGTCTACATACTGGTGAACCAACCGATTTAACACCGGAACAAATTCAAGCTGCCGAAGTTAAAGATTTCCCATCACCTGGTGGTTTCCCATCATTACACAATTCCATTCATCCATTCCTTGGACAAGGTTTTCCTGTACCAGGTTTATCACCATTAGGACCTACCGGTCTTCcattgaatataaaattagataaattcgATAAGGATGAACATGAATCGATGCTAGACGaggacgatgatgatgatgatgatattagTAATTCTGATAATCCGAATATGTTGCCGTTTGCTTCATCTCCATCAGATATACAAGGCATACCAACTAATATTGCATCACAATTGAATTGTTCAGCAGAGGATTTGTGTTCGTCCAGAAATGCCCCATCCACATCTCCAATGCAAAATGGCGAAAAATCACCTTGCCAATCTGGAATTACCAGTCCGGGTAGTTCGGAGATCCGCTCTTCACCTAATCAGACCACACCCGTCCAGGTTCCACGTCCGCCCTCATCAACACAAGCTGGTAGTCCAACACCTTCCGAGTGCAATTCTTTAGGTGCTCTGGATTTAACACCACGTACAAATCAACCGTTAATCACAAGTCCAGGTCCGAGTCCGGGCCCACCTCCatcattattttcaacatttggTCTATTACCGCCCGGCCAGGGAGCTCCAGCACCATTAATGTCATCAGCATTATCATCGTTGACATCTTCTGTTCTGACATCAACGGCATTCAGTCCATTACGTTTAGCTGTAGGTCCTGCAGGTCGTGGCAATACCACCTGTAACTTGTGCTTCAAAACATTTGCATGTAATTCAGCTTTAGAAATTCATTATAGGAGTCATACGAAAGAGCGACCATTCAAATGTAGTGTTTGTGATAGGGGCTTCTCAACGAAGGATGAATGTGCATGCAGACAGAGGCGTATCCAGGATGAAGTTGAACCGTGGAGGGCATGGAAAAGGAAACTTGCCCcgcaaaataataattcaataccATCGGTATTTCCACTACCGATGACACCTGGATACGCCTCAAACTGGATGCAAATACCTGGCAACATGAAACAACACATGTTGACGCACAAAATACGAGATATGCCCCAACAtatgtttgaaaataaacaacaacaacaacaaccgccACCTGTAAGTGGTGATGAAGGTCCTCAACAACCCCCACCTCCACCTCCACCACCGCCACCTCCGCCTCCACCACCCGCACTACAAAGAGACAatattcaaaatcaaaatgaaaatgaacaacagcaacaacaaccacaacaactaccaccaccaccacctccaCCACCCTCATCAGCGCCACCTGTGGACTCAAATAAAGAGCAAGCTACTAAAAGGGAGCCTACTGAATCGGAATTGCCACTACCTAAACGCCCTCCGAGCTTACAGGCCAGTAAACACTTGTGCCACGTATGCAATAAGAACTTCTCGTCCAGCTCGGCCTTGCAGATACACATGCGTACGCACACGGGCGATAAGCCGTTCAGATGCACCGTGTGCCAGAAGGCGTTCACCACCAAAGGAAATCTAAAGgTTCATATGGGCACGCACATGTGGAGCAACGGGGCATCCCGACGCGGCCGTCGCATGTCCCTCGATCTGCCACCCATTCCCATGACGCCCAAGGATTCAGAATTTCTGCAACGGAGGCCCGACCTTTTTTATCCATACCTACCGGCTCCCTTCCTTAATGGCATGCAACAAAAGTTAAATGAAATGTCTGTGGTGCAAACTAGCCAGAACGGGATAACGGGTAATAAATATAGTGGCCTATTAGGGTTCGGTTATCCACCACCAGAATCGCTACGTTCTCAAAGCGGTAGTTCACCGGAGAGACAAGAGAGGCCGCCTAGTCGCGATGGCCCTGACACTCGGAGCTTATGGGATCTACATTTCGATAGGAAATCAGCACCGGAAGCTCCACCTAGAGAGGATTTGTTGCCAGCTAACAGGGAAGGTTTAGCTGCGTAA
Protein Sequence
MCQRCQEQFTDVQEYLTHKAECEKKAIKHDDPAHSDPEDMVVSEEDDDDDDETSNGKRLERMRRQRQDVANNNNSIDENSPDDNPRLAFPFPIPSATGHVTLEALQNTKVAVAQFAATAMANNADNEAALQELAVLQSTLFTLQHQQVLQLQLINQLQQQLQIDRTKVDSPVSPPPSENEGECAPTEASPPPQNLPISRENTPAPVLPPPISCSSSNSNNNNSNITSCMTTITTTPQPPPIPASQEIETPVSNEVTIPPPSTTTASMISSQHCSISSSLASTIITHNNEPPSLDEPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRKNKGSVSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQPALSPGGPPHPPHLGGFPSGPPFPPTNLPLYRPHGPPPPPPELISARLQPSPHRLQEPNQRIFQPHTMFMKREEQELPENLSKPPRSPTPVHESPQCKQETPEETPRKDFNDELRSTTNVPQLTPKQEPNDDVEGEQEHERYHPSPTPYDECSIDSKYSNEDILRQSPNGDQSEQMQDEPENLSNKSNSINVPLSISTGQRLPANFSFGQVGSPPSSTSSGSLGPFSSTPIVDPAKDPAIYSNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVKDFPSPGGFPSLHNSIHPFLGQGFPVPGLSPLGPTGLPLNIKLDKFDKDEHESMLDEDDDDDDDISNSDNPNMLPFASSPSDIQGIPTNIASQLNCSAEDLCSSRNAPSTSPMQNGEKSPCQSGITSPGSSEIRSSPNQTTPVQVPRPPSSTQAGSPTPSECNSLGALDLTPRTNQPLITSPGPSPGPPPSLFSTFGLLPPGQGAPAPLMSSALSSLTSSVLTSTAFSPLRLAVGPAGRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCSVCDRGFSTKDECACRQRRIQDEVEPWRAWKRKLAPQNNNSIPSVFPLPMTPGYASNWMQIPGNMKQHMLTHKIRDMPQHMFENKQQQQQPPPVSGDEGPQQPPPPPPPPPPPPPPPALQRDNIQNQNENEQQQQQPQQLPPPPPPPPSSAPPVDSNKEQATKREPTESELPLPKRPPSLQASKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEMSVVQTSQNGITGNKYSGLLGFGYPPPESLRSQSGSSPERQERPPSRDGPDTRSLWDLHFDRKSAPEAPPREDLLPANREGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00813971;
90% Identity
-
80% Identity
-