Mvar001599.1
Basic Information
- Insect
- Mylabris variabilis
- Gene Symbol
- B0310.2
- Assembly
- GCA_037464815.1
- Location
- JAZBGW010000342.1:14597-15724[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.3e-05 0.00078 19.7 4.3 1 23 83 105 83 105 0.97 2 10 0.00034 0.02 15.3 1.0 1 23 111 133 111 133 0.98 3 10 2.8e-06 0.00017 21.8 5.0 2 23 139 160 138 160 0.97 4 10 0.00097 0.058 13.8 0.5 3 23 168 189 167 189 0.96 5 10 0.00017 0.01 16.2 0.5 2 23 195 216 194 216 0.96 6 10 0.00065 0.039 14.4 0.4 1 23 226 249 226 249 0.95 7 10 1.6e-05 0.00095 19.5 0.2 1 23 255 277 255 277 0.98 8 10 6.1e-07 3.6e-05 23.9 1.9 1 23 283 305 283 305 0.98 9 10 2e-06 0.00012 22.3 6.6 1 23 311 333 311 333 0.98 10 10 6.3e-05 0.0038 17.6 2.6 5 23 342 360 339 360 0.94
Sequence Information
- Coding Sequence
- ATGAATCTACAATGTAGCATGAATATGCTGGAAAATTCGGTTGTTGATCAATTAAATGAAACTGATGCtgatatattaaatttattaacaacagaGGATGATTGTAcagcaattttaaataatattgcaAATAATGAACAATTTGAACGTTTGATTGATATAAATGAAACGAATTTTGTTGAGGAATTAATACAGGACGAAatcaaaaatgttaataatgacACAATTATTGATGATACCACAACATTCAAATGCTATCAATGTAATAAAGgttttaaaacaaagaaattattaaaaaagcaCTTATTTATTCATAGTGGTATTAAAAAGTTTTCGTGTGATATATGTgggaaattgtttaaatatcgTTATGAAGTTGATGTACATAAAAAAAGTCACAATACACCAACATTACAATGTGATATTTGCTCAAAAATGTTTATACATAAATCACATTTAAATATACATCGTCGTAAACATTTAGGTGAATATGTAGCATTTTGTAAAGAATGTAATCTCGGTTTTGttacacaatttttatataaatcccATATAAATCTTGTACATAagaatatcaaattaatttgcGATATCTGTGGAGCCTGTCTCAGTTCATTGTCATCATTAAAAGAACATAAGTTAACCCATAATGCCAATTATGGTAAAGAACGTAATCATGTATGTGAGATTTGTGGTAGGAGTTAtctaaatttaagaaatttaaagGGTCATATAAAAGCATTACATGAGCGTATCAGACCGTATGTatgtaatatttgtggtaAATCAGTCAGTAGTAAACGTATATTAGAAACACATATTAAAATGCATACAGGCTTAAAAGATTTCGAATgtaaaatttgtgataaaCGTTTCGCATCTAAAGAATATTTAGAATTACATCATCGTATACATAGTGGAAATAAGCCGTATTGTTGTGAATATTGTGGTAAACGTTTTACACAAAAGACTTCACTCACTGTACATTTACGACATCATACTGGTCAAAGGCCATATAAATGCGAATGCGGTaaagaatttacaacaaaaagcCATTTGATGACGCATTATAAAGCCCATGATATTGGTGGTGTTGATATTGATTATATTTCAAAGCCTGTAAcctga
- Protein Sequence
- MNLQCSMNMLENSVVDQLNETDADILNLLTTEDDCTAILNNIANNEQFERLIDINETNFVEELIQDEIKNVNNDTIIDDTTTFKCYQCNKGFKTKKLLKKHLFIHSGIKKFSCDICGKLFKYRYEVDVHKKSHNTPTLQCDICSKMFIHKSHLNIHRRKHLGEYVAFCKECNLGFVTQFLYKSHINLVHKNIKLICDICGACLSSLSSLKEHKLTHNANYGKERNHVCEICGRSYLNLRNLKGHIKALHERIRPYVCNICGKSVSSKRILETHIKMHTGLKDFECKICDKRFASKEYLELHHRIHSGNKPYCCEYCGKRFTQKTSLTVHLRHHTGQRPYKCECGKEFTTKSHLMTHYKAHDIGGVDIDYISKPVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01566453;
- 90% Identity
- iTF_00987323;
- 80% Identity
- -