Mvar005576.1
Basic Information
- Insect
- Mylabris variabilis
- Gene Symbol
- ZNF296
- Assembly
- GCA_037464815.1
- Location
- JAZBGW010002119.1:5283-6990[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.9e-05 0.0047 17.3 1.1 1 23 14 36 14 36 0.98 2 15 0.00018 0.011 16.1 3.0 1 23 42 65 42 65 0.94 3 15 3e-05 0.0018 18.6 3.7 1 23 76 99 76 99 0.95 4 15 1.5e-06 8.8e-05 22.7 0.1 2 23 108 129 107 129 0.97 5 15 0.0069 0.41 11.1 1.1 1 23 169 192 169 192 0.95 6 15 0.13 7.9 7.1 0.7 1 23 213 236 213 236 0.96 7 15 0.97 58 4.4 5.2 1 23 240 262 240 262 0.93 8 15 0.026 1.6 9.3 3.8 1 23 268 291 268 291 0.97 9 15 0.033 2 9.0 0.8 1 14 297 310 297 319 0.83 10 15 0.021 1.3 9.6 1.1 1 23 325 348 325 348 0.89 11 15 2.1e-05 0.0012 19.1 0.6 2 23 360 382 359 382 0.97 12 15 2.6e-05 0.0016 18.8 1.7 3 23 395 415 393 415 0.96 13 15 9.4e-07 5.6e-05 23.3 1.1 1 23 421 443 421 443 0.99 14 15 1.3e-06 7.6e-05 22.9 1.9 1 23 449 471 449 471 0.98 15 15 0.00071 0.043 14.3 0.1 1 21 477 497 477 498 0.95
Sequence Information
- Coding Sequence
- atgAAGGAGCATCTACGTCGACACGAATCTTGTTATAATTTCGTTTGTGATATTTGTTCGAAACGATTCTTTAAACGAATCCAATTGAATGCACATAAACAAATCCATGAAAATCTACCGCAGTACATTTgtgaattttgtaataaaaaattcacatCGTTGCGCTATTTGAATAATCATCGTATGTTTAATCATTCGAAAGAAATCACGGGCGTTGAAACTACACATGCTTGCCAGGAATGTGGACGTTGTTTTAAATTCGAAGTGAGTTTAAAACGACATTTGAGCACAATACACAATATCGGCGACTGTCGGAGAGTCCCATGTCCGATTTGTAGTAAAATCCTAGCTAATCCGTACAATTTAAAGATGCACATGAGGACGCACACCGGTGAGAAATCGTTTGTTTGTGATTTgtGTAAAAGGCTTAGAAAATGTCGAAAAGCTCGAGATTTAGATGGGGATTACGAGCCGttgagtgattcaaaaacagGAAGACGTACTTACACTTGTCGGAAATGTCTGTTGGAATTCCCGCAAAGAAAACAGTTGGAAGATCACAAAAAGGCTAATCATATGAAAGATGAAGATAGTATTTATAAATACGTTTTTAAATATGATGAAAAACTACAAGTCTATATCTGTAATGTATGTTCAGCTGAATTTCAGGATCGTTTAGAAACACAACAGCATTACAAAAGGAGTCATGTAGATAAATTTTGTTGTGATCAATGCGATACAGCATTCGATAGTGCCTATGCGTTCAGTTGTCATAAACAGAAACACAATACTGATCAGTTATTTCGCTGCCCGTTTTGTTCATATTCAACGAAACGTAGAACTTGTATATTGACGCATATTAATCGTGTACATTACCATAAATTCTACTATTATTGCAAGACTTGTGGTAAAGGCTTTAACGATCTGACAATCTTTCGAGAACATGACAACGAACATAAAGGCGTCAAACCGTTCCTTTGTGTAGTCTGTGGTAAATCATTTGTATTTTCACGTTATTTATATTTCCATCAGATCCGTTATCATACTGTCAATATTGAGGGGCAGATTAAAGAGAATCAATGTCCGATATGTTCGAAGATATTCGCCAAACAAACAACATTAGTTAAACATTTATCGACTAGACACTCAAAACCGAATGCTCCGCGTGAACGACGGCATTTGTGCGATGTGTGCGGTAAACGATTTGCCACAAAAGATAAATACAGTATTCATTATAGAATACATACCGGTGATAAGCCGTATACATGTAAATATTGTCCGAAGAGTTTCATTAAGaaagattatttaattatgcacGAACGTGTCCATACTGGTGAGAAACCGTATTCGTGTCAACATTGTGGTAAATGTTTCAATCAAGCTGCACCGTTACGTATCCATATTAGAGGGCATACCGGTGAACGGCcctatatttgtaatttttgtaatgctGGATTCACGTCGAAAGGTGCTTTGAATATGCACCGGAAAGTTTGCACAGGTTCCGTTAGTTAA
- Protein Sequence
- MKEHLRRHESCYNFVCDICSKRFFKRIQLNAHKQIHENLPQYICEFCNKKFTSLRYLNNHRMFNHSKEITGVETTHACQECGRCFKFEVSLKRHLSTIHNIGDCRRVPCPICSKILANPYNLKMHMRTHTGEKSFVCDLCKRLRKCRKARDLDGDYEPLSDSKTGRRTYTCRKCLLEFPQRKQLEDHKKANHMKDEDSIYKYVFKYDEKLQVYICNVCSAEFQDRLETQQHYKRSHVDKFCCDQCDTAFDSAYAFSCHKQKHNTDQLFRCPFCSYSTKRRTCILTHINRVHYHKFYYYCKTCGKGFNDLTIFREHDNEHKGVKPFLCVVCGKSFVFSRYLYFHQIRYHTVNIEGQIKENQCPICSKIFAKQTTLVKHLSTRHSKPNAPRERRHLCDVCGKRFATKDKYSIHYRIHTGDKPYTCKYCPKSFIKKDYLIMHERVHTGEKPYSCQHCGKCFNQAAPLRIHIRGHTGERPYICNFCNAGFTSKGALNMHRKVCTGSVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -