Mvar001008.1
Basic Information
- Insect
- Mylabris variabilis
- Gene Symbol
- lola
- Assembly
- GCA_037464815.1
- Location
- JAZBGW010000187.1:9797-33899[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00012 0.0073 16.7 0.3 1 21 381 401 381 402 0.95 2 18 0.29 17 6.0 0.2 2 16 411 425 410 427 0.89 3 18 5.2e-05 0.0031 17.8 0.1 1 21 503 523 503 524 0.96 4 18 0.03 1.8 9.1 0.9 1 20 532 551 532 553 0.94 5 18 1.3e-05 0.00075 19.8 0.5 1 20 600 619 600 621 0.95 6 18 0.011 0.67 10.5 5.7 1 23 629 652 629 652 0.97 7 18 0.0001 0.006 16.9 0.3 1 21 735 755 735 756 0.96 8 18 0.0055 0.33 11.5 2.4 1 23 764 787 764 787 0.97 9 18 0.00061 0.037 14.5 4.3 1 21 979 999 979 1000 0.96 10 18 4.3e-05 0.0026 18.1 3.6 1 22 1008 1029 1008 1029 0.95 11 18 8.1e-06 0.00048 20.4 0.5 3 21 1032 1050 1030 1051 0.96 12 18 0.051 3.1 8.4 4.7 1 21 1072 1092 1072 1093 0.95 13 18 0.0052 0.31 11.5 0.7 1 21 1128 1148 1128 1149 0.92 14 18 4.6 2.7e+02 2.3 0.5 5 15 1160 1170 1149 1172 0.81 15 18 1.1e-06 6.4e-05 23.1 0.8 1 21 1179 1199 1179 1200 0.97 16 18 0.006 0.36 11.3 0.4 1 20 1219 1238 1219 1240 0.95 17 18 0.00043 0.026 14.9 7.0 1 21 1254 1274 1254 1275 0.96 18 18 3.7e-05 0.0022 18.3 2.0 1 23 1283 1306 1283 1306 0.97
Sequence Information
- Coding Sequence
- ATGGATGACGACCAACAATTTTGTCTACGATGGAACAATCATCAATCCACATTAGTTGCTGTATTTGATACATTATTGGAGAATGGAACATTAGTAGATTGCACATTGGCAGCAGAAGGAAAATGTTTGAATGCGCACAAAGTAGTCTTGTCAGCATGTAGTCCATTTTTCGAAtcacTATTATCAAGACATTTCGACAAACAtccaatattaatattaaaagacgtcaaatttcaagaattaaAAGCAATGATGGACTACATGTATAGAGGTGAAGTCAACATATCTCAAGATCAATTGGGTGCTTTATTGAAAGCAGCCGAATCGCTTCAAATTAAAGGCTTATCAGATAATCGAAAAGGTGGTGGTGAAAATGAACGCAAACCAAcattaccaccaccgccaccagcTAAAAGCCCTCAACCATCATCATCGTCTTCGTCATCATTACCAAAAGTACAAGGCCTAACGATAGAACAGCGAAATCAACGTGACGATAGCCGTGAGGGTTCACAATCACCAggacaaagaaagaaaaagcGAATAAGACGTCGTAGTGAAGAATTAGATAACCATCATGACGCTTCAAATTCATCAGAATCTCATAGTAATCAAACACCCGCCCAAAACATTCCTTCTTCAATGTTACCTGTCTCGAAAATTGCCGATGTGCCTGAAAATGTAGAAACCAAATCAGAACTATTAACGAGGCATAAACAACAATCGGATGATGGATCACAAGTTcctataataaaagaaaaattagaaacacaTACAGAACTGATGCTGGAACCAAAGTCTGAATATGTTGACGAAATGAATGAGGACAGTATTGAAGATTTGACATTGGACGATGATGATATTAGTAACATGGAAACAATGGATGATGGAGCTGGGCCTAGTCATGGCAATGCGGGTGAAGGTTCAAGTCAAGgTTTTGGCGGTTGGCATATGGGTAACCAAAGTCAAGATGAAGTATTTTTAGCCGCACAAGAAGCGGTTGGAGCTCATCGTGATTCACAAGGTGTTGTGTCCAATCAATTAAGTCCTATATACAACTTGGCAAGATATTTAACATCAGACTCAATACATTGTGAAGACTTGAAGAAATTAGAATTATCAATAGATAGTAAATTGTTCCATCCATGTCCTAATTGTCCGAAAGTGTATAGGGGCAAATATACGTTATCTAGACATTTACGTTTAGAATGTGGTAAAGTACCAACAAATAAATGTCAGATTTGTGGTCAATTATTTACACATAAACATCGACTTATAAGCTTAATTGGTGAAACTTCATTATTAGAGGATACACTAGAACCGTCAGAATATGATGGCAATTGGACTGTTCAAGTTATCTATCCTGAAAATGATGGTATTTTATCACAAACTATAGAAAACAACGATGAATCAATTATCAGAAAGTCATCTGAATTTAGTGTTATTAATAttggaaataattttaatgaaacaacaaatataaaaaataatccaatatctaaaaattacGTGTGTCCTAATTGTAATAAAGTTTATAATGCCCGTAGAAATCTAACAAGACATATTAATTTAGAATGCGGGAAAGAGCCCCGATATGCATGTAGTAATTGTGGTTATCGTAGTTATAGAAGAAATGAAATGACAAAACATATTCATCTACCAGTGAGCATAGAACTGAAAGTTGAAGATGCATCATCAGCTGCTAGCATATTAAGTCCATGGTTAATATGGTCAGAAGATAATGATAAAAGACCGAAACGTAAATCAACACCATCCAGTAATCGTATACGTGGTCATTTTTCATGTCCACAATGTGATCGTAGTTATATACGTAAAGATTCATTACAAAGACATTTAACATATGAATGCGGCAAGGAGCCACAATTTCAATGTCCATTCTGTCCACAGAAGTGTAAACGGAAAGCCCACCGCATTCGACATATAACACGACAACATAAGGACAAAATTGGTATTTTAGAGGAGAATAATCctgatttgaaattaattaaagCCCAAGATTTGCGCGTATCACGTCCATGGGAACGCTGGCCATCCCATTTAGCATTACCAATGATGTTGATGCgtgaaaatatgaaaaaatcaatgatacAAACATTTGCTAGTTCAGCATTAGATATAACATCATTAGgaacaacatcaacatcaaaaACACGTAATCGTTTAAGTCCAGATGGTAATGGCTTTGAATGTTCTGTATGTGgtagaatttataaattgaaaagttcATTGCGCAACCATCAAAAATGGGAATGTGGTAAAGAACCACAATTCAAATGTCCATATTGTGTTTATAAAGCTAAACAGAAAATGCATATGGCCAGACATATGGAACGAATGCATAGAGAAATTGATTATTCATCGGTTAAATCGGAAGTTTCTATTAAAAGTGAAAAAACGTTACAACCGAAGCCGCTTATCAAAATTCTAGCTGTTGAAGATATACATAAcgattttattcaaacaaatataaagaaagaaacaataccaaatgtaaaaattgataataaaactacAAATCAAACTGTTAAAAGAACTGATGAATTGTCGAATGTTATTAAACAGGAGAATATTGAACATCATGAATTAAatacagcaacaacaataacatcaGCAAAAAAGAATTTTGGACGGCCACGATCGACACTGGCATTGAATCGAATGAAAGTCTTCTTAGATATGACACCGATGGATTTACCGAAATCAACAAAGAAGATTAGGGCTTGTGAGAAGGATATTTCACAATTAAAACAGCCGATTGATACGTTACGTTGTTATAAATGCGGTGTATTATTTGAACattGCTATAATTCTGATCAAGAAAATCCAAAAACCAAACGATCATCATCTAACAAAAAACTACCGGTGGATGTCTCAATGGATAACAACATAGAAATACCAGTATTAAGTGAACTATTTATGTGTACGAAATGTACGAAAACATATCGTTTAAAACATTCATTAACACGACATATGAAATTCGAATGCGGTAAAGAACCGATGTATGCATGTCATTTTTGTCCACGTCGTTTCAAACATAAATACGATTTGAACGTTCATATGAAAAAGTTCGGCTGTCCACAATGTAACAAAACTTATCGCCGACCGGATTCATTACGACGTCATTTAAGAAATGAATGCAATATGAATGGTAGATGGGCATGTCCTTTATaTTATCTGGAACATAATGGAACGTATTTTTGCATGAAAtgctttaaaaaatacaaacataaGGGCAATATACGGCGACATTTAAAATACGAGTGCGGCAAAGAGGCAATGTTCGAATGTAATATGTGTTCATTCCGCTttttttggCGACCTGGTAGAGcaagtaaatattttatggATGCAAATGGTCGTTATCCGTGCATTAAATGTGGCTCATCATATAAACAAAAGACACATTTAATACGACATATTAATTTCGAATGTGGTGTTGAACCAAAATTTATCTGTTTCTGTGGTCGACGTTTCAAACAGAGAAgtGAGAATATTGAGGAGGGACAATTGACCTATCAATGTCCTCAATGTGATAAAAAGTACAGATCCAGTGGTTCTTTGAGGCGTCATATACGATATGCTTGTGGACGTAGAGGGCCACCATTAACTGGATATATTATCGCTAAAGACAAATTCATTTGTGAACGTTGTAGAAAGATTTATAAGAGCAAATCGACAATACGTCGTCATATTGTTTACGAATGTGTGGGTTACTATcgacaacagcaacaacaaagGTACTATTGTCATAATTGTGACAAAAGTTACAAACATAAACGGCATTTATCTAGCCATTTGAGATATGAATGTGGTAAAGCTCCAGGATTTGAGTGTTTTGTCTGTAGTAAGAAATTCTATCAAAAGTACACATTGAATGCACATTTACGACAAATACATCCGCAATTCATCAAAATCGATCTTTAA
- Protein Sequence
- MDDDQQFCLRWNNHQSTLVAVFDTLLENGTLVDCTLAAEGKCLNAHKVVLSACSPFFESLLSRHFDKHPILILKDVKFQELKAMMDYMYRGEVNISQDQLGALLKAAESLQIKGLSDNRKGGGENERKPTLPPPPPAKSPQPSSSSSSSLPKVQGLTIEQRNQRDDSREGSQSPGQRKKKRIRRRSEELDNHHDASNSSESHSNQTPAQNIPSSMLPVSKIADVPENVETKSELLTRHKQQSDDGSQVPIIKEKLETHTELMLEPKSEYVDEMNEDSIEDLTLDDDDISNMETMDDGAGPSHGNAGEGSSQGFGGWHMGNQSQDEVFLAAQEAVGAHRDSQGVVSNQLSPIYNLARYLTSDSIHCEDLKKLELSIDSKLFHPCPNCPKVYRGKYTLSRHLRLECGKVPTNKCQICGQLFTHKHRLISLIGETSLLEDTLEPSEYDGNWTVQVIYPENDGILSQTIENNDESIIRKSSEFSVINIGNNFNETTNIKNNPISKNYVCPNCNKVYNARRNLTRHINLECGKEPRYACSNCGYRSYRRNEMTKHIHLPVSIELKVEDASSAASILSPWLIWSEDNDKRPKRKSTPSSNRIRGHFSCPQCDRSYIRKDSLQRHLTYECGKEPQFQCPFCPQKCKRKAHRIRHITRQHKDKIGILEENNPDLKLIKAQDLRVSRPWERWPSHLALPMMLMRENMKKSMIQTFASSALDITSLGTTSTSKTRNRLSPDGNGFECSVCGRIYKLKSSLRNHQKWECGKEPQFKCPYCVYKAKQKMHMARHMERMHREIDYSSVKSEVSIKSEKTLQPKPLIKILAVEDIHNDFIQTNIKKETIPNVKIDNKTTNQTVKRTDELSNVIKQENIEHHELNTATTITSAKKNFGRPRSTLALNRMKVFLDMTPMDLPKSTKKIRACEKDISQLKQPIDTLRCYKCGVLFEHCYNSDQENPKTKRSSSNKKLPVDVSMDNNIEIPVLSELFMCTKCTKTYRLKHSLTRHMKFECGKEPMYACHFCPRRFKHKYDLNVHMKKFGCPQCNKTYRRPDSLRRHLRNECNMNGRWACPLYYLEHNGTYFCMKCFKKYKHKGNIRRHLKYECGKEAMFECNMCSFRFFWRPGRASKYFMDANGRYPCIKCGSSYKQKTHLIRHINFECGVEPKFICFCGRRFKQRSENIEEGQLTYQCPQCDKKYRSSGSLRRHIRYACGRRGPPLTGYIIAKDKFICERCRKIYKSKSTIRRHIVYECVGYYRQQQQQRYYCHNCDKSYKHKRHLSSHLRYECGKAPGFECFVCSKKFYQKYTLNAHLRQIHPQFIKIDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01022330;
- 90% Identity
- iTF_01022330;
- 80% Identity
- iTF_01022330;