Basic Information

Insect: Mylabris variabilis
Gene Symbol: -
Assembly: GCA_037464815.1
Location: JAZBGW010000893.1:1-3037[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.7 1e+02 3.6 5.7 2 20 26 42 25 50 0.80

2 16 1.7e-05 0.001 19.3 2.7 3 23 55 74 54 74 0.98

3 16 0.00014 0.0086 16.4 5.5 1 23 84 107 84 107 0.98

4 16 0.00016 0.0098 16.3 0.7 1 23 114 136 114 136 0.97

5 16 3e-05 0.0018 18.6 0.7 2 23 143 164 143 164 0.97

6 16 0.0032 0.19 12.2 0.4 1 14 170 183 170 185 0.90

7 16 2.6e-06 0.00015 21.9 1.4 3 23 193 213 192 213 0.96

8 16 3.6e-08 2.2e-06 27.8 2.3 1 23 219 241 219 241 0.98

9 16 0.032 1.9 9.0 6.3 1 23 247 269 247 269 0.98

10 16 6.3e-05 0.0037 17.6 0.3 1 23 275 298 275 299 0.93

11 16 7.1e-06 0.00042 20.6 1.5 3 23 304 324 302 324 0.96

12 16 3.3e-06 0.0002 21.6 4.1 1 23 334 357 334 357 0.98

13 16 0.00096 0.058 13.8 0.1 1 23 364 386 364 386 0.97

14 16 1.2e-07 7.4e-06 26.1 1.7 2 23 393 414 393 414 0.98

15 16 2.7e-08 1.6e-06 28.1 0.8 1 23 420 442 420 442 0.98

16 16 5.4e-05 0.0033 17.8 0.5 1 23 448 471 448 471 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.7	1e+02	3.6	5.7	2	20	26	42	25	50	0.80
2	16	1.7e-05	0.001	19.3	2.7	3	23	55	74	54	74	0.98
3	16	0.00014	0.0086	16.4	5.5	1	23	84	107	84	107	0.98
4	16	0.00016	0.0098	16.3	0.7	1	23	114	136	114	136	0.97
5	16	3e-05	0.0018	18.6	0.7	2	23	143	164	143	164	0.97
6	16	0.0032	0.19	12.2	0.4	1	14	170	183	170	185	0.90
7	16	2.6e-06	0.00015	21.9	1.4	3	23	193	213	192	213	0.96
8	16	3.6e-08	2.2e-06	27.8	2.3	1	23	219	241	219	241	0.98
9	16	0.032	1.9	9.0	6.3	1	23	247	269	247	269	0.98
10	16	6.3e-05	0.0037	17.6	0.3	1	23	275	298	275	299	0.93
11	16	7.1e-06	0.00042	20.6	1.5	3	23	304	324	302	324	0.96
12	16	3.3e-06	0.0002	21.6	4.1	1	23	334	357	334	357	0.98
13	16	0.00096	0.058	13.8	0.1	1	23	364	386	364	386	0.97
14	16	1.2e-07	7.4e-06	26.1	1.7	2	23	393	414	393	414	0.98
15	16	2.7e-08	1.6e-06	28.1	0.8	1	23	420	442	420	442	0.98
16	16	5.4e-05	0.0033	17.8	0.5	1	23	448	471	448	471	0.96

Sequence Information

Coding Sequence: tttcaaaaaatcataaacGATGATTGCTTATCGAAACAGAATGAAATTGTAATGACAACAATGAAGAATTCATTACAATGTCCACATTGTGGACGTATTTGTAAacGTGAATTAAAGGCGCACACCACTGGTAGACATTTTAGAAATCACACATATAGTCTTTGTAGTATATGTGGCCAATCATTCAGTAGTTCACATTTGAAAGATCACATGAAACGACACCAGGAAGGTTATACTGAACGGcgtaattttaaatgtaatttttgtacGAAAACTTTTATGCAGATGATGCATTTAAGGAAACACATCAATCGAATGCACAATAGTAATCGTAGTAAACATATATGTGAGAtttgtaataaacaattaactaGTAGTTATGGTTTAATTGTACATAAACGTATACATGAAGATTTCAAAGGTAACGAATGCAATTTTTGTGGTAAACggtttacatttaaaaaagtattAGTTGAACATATTAGAATACATTCTGGTGAGAAACCGTATGTTTGCAATATTTGCCACAAGGCGTTCTCGCAAAGGAATCAAACATTGGTGTATAGATTCAAAAATTGTCCATATTGTTCAAAggtgtttaaaaataatcgtctATTGAAAAGACACTTGTTTGTTCATAGTGAAAGTCGTCCATATTCATGTGATATCTGTCAGAAGACATTTAAACGAAGAAGCTCATTGAATCGACATATAAACAATCATAATAATCGAACAGAATTCGAATGCGATATATGCCATAAGAAAAGTACATGTTATAGTAATTTATTGTTGCATCGTCGACGCCATTTCAAAGATTATAAATTCAGCTGCGAAATCTGCGGACAAGGTTTCATCTCAAACGGTGAATATAAACAGCATATTGAAGGCAAACATCATCGTACACATttatgtaatatttgtggtaGATCATTCTATAATAAACAAGGATTAGATTCGCATATGAAACGACACGAGGACAATTATACAGAGAAACGCAATTATAAATGTGAATATTGTCCGAAAACGTTCATGCAAGAGATGCATTTGAAAAAGCACCTGAAACGTATGCATAGCGATAGCCGGCCGAAATTCATTTGTGATCTGTGCGGTAAAGAATTGGCAAGTCGTGGTGGTCTACAATATCATAAAAATGTACACGATGGGATTAAAGAGAATGAATGTACTTTGTGTGggaaaaaattcaatcgtAAAGACACATTAGTACAACATATGCGTACACATTCTGGTGAACAGCCGTACAGTTGTCCATTCTGTGGAAAATCGTTTACACAACGATCGCCGTTAACGATTCATATGCGACAGCATACTGGAGAGAAACCGTATTCGTGTGAAATTTGCGGCGAGCGATTCGTTAGTAAAAATGCACTTTCGATGCATTCGAAAAGCAAACATAAATAG
Protein Sequence: FQKIINDDCLSKQNEIVMTTMKNSLQCPHCGRICKRELKAHTTGRHFRNHTYSLCSICGQSFSSSHLKDHMKRHQEGYTERRNFKCNFCTKTFMQMMHLRKHINRMHNSNRSKHICEICNKQLTSSYGLIVHKRIHEDFKGNECNFCGKRFTFKKVLVEHIRIHSGEKPYVCNICHKAFSQRNQTLVYRFKNCPYCSKVFKNNRLLKRHLFVHSESRPYSCDICQKTFKRRSSLNRHINNHNNRTEFECDICHKKSTCYSNLLLHRRRHFKDYKFSCEICGQGFISNGEYKQHIEGKHHRTHLCNICGRSFYNKQGLDSHMKRHEDNYTEKRNYKCEYCPKTFMQEMHLKKHLKRMHSDSRPKFICDLCGKELASRGGLQYHKNVHDGIKENECTLCGKKFNRKDTLVQHMRTHSGEQPYSCPFCGKSFTQRSPLTIHMRQHTGEKPYSCEICGERFVSKNALSMHSKSKHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -