Basic Information

Insect: Mylabris variabilis
Gene Symbol: -
Assembly: GCA_037464815.1
Location: JAZBGW010000893.1:17639-19480[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 2.8e-05 0.0017 18.7 1.1 1 23 3 25 3 25 0.97

2 19 0.00045 0.027 14.9 2.9 1 23 31 53 31 53 0.99

3 19 0.00021 0.012 15.9 0.8 3 23 61 82 60 82 0.94

4 19 0.00033 0.02 15.3 1.5 3 23 89 109 88 109 0.95

5 19 0.00031 0.018 15.4 2.8 1 23 119 142 119 142 0.96

6 19 0.023 1.4 9.5 0.5 1 23 149 171 149 171 0.97

7 19 1.1e-07 6.7e-06 26.2 1.6 2 23 178 199 178 199 0.98

8 19 5.2e-06 0.00031 21.0 0.5 1 23 205 227 205 227 0.98

9 19 3.3e-05 0.002 18.5 1.2 1 23 233 256 233 260 0.97

10 19 3.5e-05 0.0021 18.4 2.7 2 23 267 288 266 288 0.97

11 19 3.7e-07 2.2e-05 24.6 1.2 1 23 294 316 294 316 0.98

12 19 0.009 0.54 10.8 2.8 1 23 322 344 322 344 0.99

13 19 0.00096 0.058 13.8 0.3 3 23 352 373 351 373 0.93

14 19 0.0019 0.11 12.9 4.3 3 23 380 400 379 400 0.97

15 19 1.7e-06 0.0001 22.5 3.9 1 23 410 433 410 433 0.98

16 19 0.00034 0.02 15.3 1.0 1 23 440 462 440 462 0.98

17 19 1.4e-06 8.2e-05 22.8 2.3 2 23 469 490 469 490 0.98

18 19 4.5e-05 0.0027 18.0 8.1 1 23 496 518 496 518 0.98

19 19 4.5e-06 0.00027 21.2 0.6 1 23 524 547 524 547 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	2.8e-05	0.0017	18.7	1.1	1	23	3	25	3	25	0.97
2	19	0.00045	0.027	14.9	2.9	1	23	31	53	31	53	0.99
3	19	0.00021	0.012	15.9	0.8	3	23	61	82	60	82	0.94
4	19	0.00033	0.02	15.3	1.5	3	23	89	109	88	109	0.95
5	19	0.00031	0.018	15.4	2.8	1	23	119	142	119	142	0.96
6	19	0.023	1.4	9.5	0.5	1	23	149	171	149	171	0.97
7	19	1.1e-07	6.7e-06	26.2	1.6	2	23	178	199	178	199	0.98
8	19	5.2e-06	0.00031	21.0	0.5	1	23	205	227	205	227	0.98
9	19	3.3e-05	0.002	18.5	1.2	1	23	233	256	233	260	0.97
10	19	3.5e-05	0.0021	18.4	2.7	2	23	267	288	266	288	0.97
11	19	3.7e-07	2.2e-05	24.6	1.2	1	23	294	316	294	316	0.98
12	19	0.009	0.54	10.8	2.8	1	23	322	344	322	344	0.99
13	19	0.00096	0.058	13.8	0.3	3	23	352	373	351	373	0.93
14	19	0.0019	0.11	12.9	4.3	3	23	380	400	379	400	0.97
15	19	1.7e-06	0.0001	22.5	3.9	1	23	410	433	410	433	0.98
16	19	0.00034	0.02	15.3	1.0	1	23	440	462	440	462	0.98
17	19	1.4e-06	8.2e-05	22.8	2.3	2	23	469	490	469	490	0.98
18	19	4.5e-05	0.0027	18.0	8.1	1	23	496	518	496	518	0.98
19	19	4.5e-06	0.00027	21.2	0.6	1	23	524	547	524	547	0.97

Sequence Information

Coding Sequence: ATGAAATTTTTCTGTCCGATCTGCAATCGTGGTTGCCGTTCAAAATCGGCACTATTAACACATCAAATTGTCCATTATGATTCTAAACCGTTTCAATGTGATAcgtgtttgaaaaatttcaaaacttaTGAAACTTACATAATACACCGCCGCCGACATTTACAAGATTATAAAGAATTCTGTAAGATTTGCAATACTGGCTTCGTATCAAAATCGGATTATAACAAACACGTTCAAGCTAAACATGAAAAAACATCCAATATTTGTACGATTTGTAATAAAAGATTTTCTAGTAAATATTATTTGGATTATCACAATAAATTACatgaagaaaattattataaagaacgtaattttatttgtgaaatatgCAGTAAGACGTTTTTAAGGAAGAAACATCTGGACCGACATATAAAACTATCACATACAGACGATGGACGTAAATATGTTTGTGATGTTTGCGGTAAAGAGATGCCAACAATGACAAAATTGACATACCATAAAAATTACCATCAAGGTATCAAACCGAATGAATGTAATCTATGTGGGAAGAAATTCAATCGTAAAGACACATTAGTCCAACATATGCGTACACATTCTGGTGAAAAACCGTACACTTGTCAGTTTTGTGGCAAATCATTCACACAAGGTGGGCCGTTGAAGATCCATATAAGACAGCATACCGGCGAGAAACCGTACTCTTGTAACATCTGCGAAGAGAGTTTTATCAGTAAGAGTGTATTGACTgtccatttaaaaaacaaacaccaGAAGGTGCATGGCTCGAAAAAACTGAAACAATGCCCGAAATGTCCAAGAAAATTCCAACACACGTCGCAGTTGaataaacatttaataataCACAACGAAAATCGCCCTTATTCTTGTGATATATGCAAGAAAGCGTTTAAACGAAAATACAGTTTAGTCTCCCATCAGATGGTGCACAACGATTCAAAACCGTACAAATGCGATATTTGTTTGAAACGTCTAAAGAAATACCAAAGTTACATCGATCACCGTCGCCGTCATTTGGGCGATTTCACGGAATTTTGTAAAGACTGCAACATCGGCTTCATATCGAACACTGAATATAAAGCACACATGGACGGCAAACATGGCGATCGTTCGAATATCTGTACAGTATGCAATAAAACATTCTATTGTAAATACACACTAAAATATCATATGAGACTACACGAGGAGGGCTACCGTGAAAAGCTCAATTTCAAGTGCGATTTATGCGGTAAATGTTTCTCACAGAAATTGTATTTGAATCGTCATGTGAAGATGATGCATGAAGACGGCGGACAGAAATTCGTTTGTGATTTGTGTGGTAAAGAATTGCGAACAATGGTCAGTTTACGACACCACAAAAACGTACACCAAGGCGCTAAACCGAATGAATGTAAACTGTGCGATAAACGTTTCAATCGTAAAACTACACTAGTGCTACATATGCGAACGCATTCCGGTGAACGGCCGTACACTTGCAAATTTTGTGGTAAATCATTCACGCAAAGGTGTACGCTGACGATCCACCATCGACAGCATACTGGCGAGAAACCGTACAGTTGTGATATTTGCCAAGAGAAGTTCATCAGTAAGAGTGCTCTTACGATACATCTGAAGAGCAAGCATCGAAAATTGTGA
Protein Sequence: MKFFCPICNRGCRSKSALLTHQIVHYDSKPFQCDTCLKNFKTYETYIIHRRRHLQDYKEFCKICNTGFVSKSDYNKHVQAKHEKTSNICTICNKRFSSKYYLDYHNKLHEENYYKERNFICEICSKTFLRKKHLDRHIKLSHTDDGRKYVCDVCGKEMPTMTKLTYHKNYHQGIKPNECNLCGKKFNRKDTLVQHMRTHSGEKPYTCQFCGKSFTQGGPLKIHIRQHTGEKPYSCNICEESFISKSVLTVHLKNKHQKVHGSKKLKQCPKCPRKFQHTSQLNKHLIIHNENRPYSCDICKKAFKRKYSLVSHQMVHNDSKPYKCDICLKRLKKYQSYIDHRRRHLGDFTEFCKDCNIGFISNTEYKAHMDGKHGDRSNICTVCNKTFYCKYTLKYHMRLHEEGYREKLNFKCDLCGKCFSQKLYLNRHVKMMHEDGGQKFVCDLCGKELRTMVSLRHHKNVHQGAKPNECKLCDKRFNRKTTLVLHMRTHSGERPYTCKFCGKSFTQRCTLTIHHRQHTGEKPYSCDICQEKFISKSALTIHLKSKHRKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -