Basic Information

Insect: Mylabris variabilis
Gene Symbol: -
Assembly: GCA_037464815.1
Location: JAZBGW010000893.1:10138-15830[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.0048 0.29 11.7 1.5 5 23 2 21 1 21 0.95

2 28 2.7e-06 0.00016 21.9 6.2 1 23 27 50 27 50 0.97

3 28 9.1e-06 0.00055 20.2 1.6 3 23 57 77 55 77 0.98

4 28 0.00039 0.023 15.1 2.5 3 23 86 106 84 106 0.95

5 28 0.018 1.1 9.9 1.6 1 23 116 139 116 139 0.98

6 28 0.00013 0.0078 16.6 0.1 1 23 146 168 146 168 0.97

7 28 4.3e-05 0.0026 18.1 2.1 1 23 174 196 174 196 0.98

8 28 1.7e-07 1e-05 25.6 2.1 1 23 202 224 202 224 0.99

9 28 0.15 8.8 7.0 0.3 1 11 230 240 230 243 0.92

10 28 0.00025 0.015 15.7 2.0 2 23 248 270 247 270 0.96

11 28 4e-07 2.4e-05 24.5 4.2 1 23 276 298 276 298 0.98

12 28 3.8e-05 0.0023 18.3 1.8 1 23 304 326 304 326 0.98

13 28 0.00014 0.0083 16.5 0.5 1 23 332 355 332 355 0.93

14 28 2e-05 0.0012 19.2 3.4 3 23 361 381 359 381 0.96

15 28 1.8e-05 0.0011 19.3 4.4 1 23 391 414 391 414 0.97

16 28 0.0029 0.17 12.3 0.3 1 23 421 443 421 443 0.95

17 28 4.4e-05 0.0026 18.1 2.2 2 23 450 471 449 471 0.97

18 28 3.1e-07 1.8e-05 24.8 0.3 1 23 477 499 477 499 0.99

19 28 0.014 0.87 10.1 4.1 2 23 778 799 777 799 0.96

20 28 3.8e-07 2.2e-05 24.6 3.6 1 23 805 827 805 827 0.98

21 28 0.0086 0.52 10.8 1.0 1 23 833 855 833 855 0.99

22 28 0.0032 0.19 12.2 0.6 2 23 862 884 862 884 0.94

23 28 2.2e-05 0.0013 19.0 3.5 2 23 888 909 888 909 0.97

24 28 0.19 12 6.6 3.6 2 23 920 942 919 942 0.95

25 28 0.0033 0.2 12.2 0.6 1 23 949 971 949 971 0.97

26 28 1.5e-06 8.9e-05 22.7 2.2 1 23 977 999 977 999 0.96

27 28 8.2e-06 0.00049 20.4 0.7 1 23 1005 1027 1005 1027 0.98

28 28 0.026 1.6 9.3 1.1 1 23 1033 1056 1033 1057 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.0048	0.29	11.7	1.5	5	23	2	21	1	21	0.95
2	28	2.7e-06	0.00016	21.9	6.2	1	23	27	50	27	50	0.97
3	28	9.1e-06	0.00055	20.2	1.6	3	23	57	77	55	77	0.98
4	28	0.00039	0.023	15.1	2.5	3	23	86	106	84	106	0.95
5	28	0.018	1.1	9.9	1.6	1	23	116	139	116	139	0.98
6	28	0.00013	0.0078	16.6	0.1	1	23	146	168	146	168	0.97
7	28	4.3e-05	0.0026	18.1	2.1	1	23	174	196	174	196	0.98
8	28	1.7e-07	1e-05	25.6	2.1	1	23	202	224	202	224	0.99
9	28	0.15	8.8	7.0	0.3	1	11	230	240	230	243	0.92
10	28	0.00025	0.015	15.7	2.0	2	23	248	270	247	270	0.96
11	28	4e-07	2.4e-05	24.5	4.2	1	23	276	298	276	298	0.98
12	28	3.8e-05	0.0023	18.3	1.8	1	23	304	326	304	326	0.98
13	28	0.00014	0.0083	16.5	0.5	1	23	332	355	332	355	0.93
14	28	2e-05	0.0012	19.2	3.4	3	23	361	381	359	381	0.96
15	28	1.8e-05	0.0011	19.3	4.4	1	23	391	414	391	414	0.97
16	28	0.0029	0.17	12.3	0.3	1	23	421	443	421	443	0.95
17	28	4.4e-05	0.0026	18.1	2.2	2	23	450	471	449	471	0.97
18	28	3.1e-07	1.8e-05	24.8	0.3	1	23	477	499	477	499	0.99
19	28	0.014	0.87	10.1	4.1	2	23	778	799	777	799	0.96
20	28	3.8e-07	2.2e-05	24.6	3.6	1	23	805	827	805	827	0.98
21	28	0.0086	0.52	10.8	1.0	1	23	833	855	833	855	0.99
22	28	0.0032	0.19	12.2	0.6	2	23	862	884	862	884	0.94
23	28	2.2e-05	0.0013	19.0	3.5	2	23	888	909	888	909	0.97
24	28	0.19	12	6.6	3.6	2	23	920	942	919	942	0.95
25	28	0.0033	0.2	12.2	0.6	1	23	949	971	949	971	0.97
26	28	1.5e-06	8.9e-05	22.7	2.2	1	23	977	999	977	999	0.96
27	28	8.2e-06	0.00049	20.4	0.7	1	23	1005	1027	1005	1027	0.98
28	28	0.026	1.6	9.3	1.1	1	23	1033	1056	1033	1057	0.97

Sequence Information

Coding Sequence: ATGAAATGTCGGAAATTCTTCAAAACTAACTTCAATTTACGAACCCATTTATTGTCGGTTCACGAGGAGAATCGACCGTTTTCATGCGACATTTGCAATAAAAGCTTCAAACAAAAAGGCCATTTACAACGACACCACAGTACTCAACACACCGATACAACATTTGGTTGTAATATTTGccaaaaacaattcaaaacaatttataatttgagaaTTCACCAACGGCGTCATTTAAAAGATCGTAAGAGGCATTTGTGTAATTTCTGTGGACGATCATTCTATGATCGTTACGGATTTGTTAGACATTTATCAATGCACGAAGAGAATTATAAACAGAAACGCAACTATAAATGCGAACTTTGTTCGTCGACATTCCTCCAAATGGAGTATTTACGGAGACATATAAAGAGCCAACATAGTGATAATCGTAGGAAATATACGTGTGAATTGTGTGGAAAAGAATTTGTAACGCCGGCTGGTTATAAAGATCATAAAGATATTCATTTAGGTGTGAAATCGTTCGAATGTGTTACTTGTGGCAAGAAATTCTTCAAGAAATTCGTCTTACAAATCCACATGAGGACGCATACTGGTGAAAAACCGTATACTTGTACAACTTGTGGAAAAACTTTCGCTCACAGTAGTGGACTGCGAGTACATCTACGTTCGCACAATCCTGAAAAACCATACAAATGCAACATTTGTAATAGGGAATTCACATGGACGTCGAGTAAATCAATTCAATGTTCCGaatgtttcaaatatttcaaaactaAACGTTCATTGCGAATACATTCGCGTTCTGTACACACACAGGACCGGCCATATTCATGTGAAATATGTAAGAAAtcgtttaaacaaaaataccaTTTAAAAGTACACCAGAATGTGCATATTGAGACTGTGAAATTTGAGTGTGATATTTGCGAAAAGAAGCTCACTACATCGTACAGTTTAAAGGAGCATAAACGACGCCACTTGAAAGATTATCAATACAATTGTAAATTGTGTGGGAAGCTTTTCGTATCGAAAGGTGATTATAATCAACATATGGATGGTCAGCATAATAAACGACATCTTTGTAATATCTGTGGTAAATCCTCATATGATAGACATGCATTGATAAGACATATGAGACGGCATGAAGAAAACTACACAGAGAATCGTAATTTCGAATGCGAATATTGTCCAAAGAAATTCTCACAGATGTTCCATTTGAAAAAGCATGTAAAACGAATGCACGACGATAATCGCCAGAAATATGTATGTGACACATGTGGCAAAGAATTGTCATCTGTTCAAAGTTTGAAACAGCACAAGGATCTCCATTTGGGCGTTAAACCAATTCATTGTGGTATTTGTACGAAAACGTTTGCCAAAAGGAAGACTCTAGTGCTCCATATGCGTACACATACTGGTGAAAAACCGTACGTTTGTACCGTTTGCGGAAAGGCATTTTCACAACGTACACCATTAACTGTACATTTACGGACCCATACAGGAGAAAAACCTGAGAACGAAGCACCATCGGACATAGAGGAAGAGACCGAGACATCAACGAAACTAGATTTAATTCCACCGAaatctaaagaaaaatatgaaatgGCATACAGACGTTTCCTAGCATATCGTCTACAAAACGACATAAAAGTTTGTACAGAAACCGTGATGATCAGatactttaaagatttgtcgacaaaaataaaatcgtcTACATTATGGTCTGTGTATTCGATGCTGAGAGCAACGttaaatcaaaaagaaaaaatcgatatatcgaaatttcaaaaaatgcgAGCCTTTTTGAAACGTCAATCGCAAGGCTACAAGGCGAAAAAATGCAGATTGTTGACAAAGGACCAAGTGCAGAGATTTATTTTCGACGCCCCTGACGATAAATATCTAATGATCAAAGTTGCTTTAATTTTTGGAATATCAGGGTCGTGTAGACGAAACGAGCTAGCCCAAATGCATGTTAACGATATTGAAGACATGGGATTTAAGcttcttatcaaaattaagGATAATCGAACAAATGAACCACGATATTTCGTTGTAAGCGACACTTATTTAGACGTGTACCGAAAATATGTAGCATGTCGTccgaaaaattttgaaaattctcgattCTTCTTCAAGTATGCTAATGGTGTTGGCGCGAAACAGGTAGTCGGTATAAACACGTTCGGTAAAATTCCACAGATTGTCGCCAATTATTTAAGATTACCGAATGCAAAAGAATATACCGGACACTGTTTCCGGCTATCTGGTAAAGTCTTAGGCAAAGTTGGTATCTTTTTGGGCAAATCAGTGGCTAACAACAAATCGAAACAATGTCCTCAttgtttgaaaacatttcTAAATAGACGAACATTAAGGAAACATTTGTTTGTACATACAGAAAATCGACCGTACACCTGTGAGATGTGTGATAAATCATTTAAACGTAAAGAAACATTAACAAGACATCGAAAAAATCACGATAATGCAACATTTTATGAATGCGATGTCTGTTTGAAACGGATCAAAACCAAATTAGGTTTCATCACACATCAACGTCGTCATTTGAAAGATTTTAAAGAGGTTTGCAGTATATGCGGCGGCTGTTTTGTAACAACAGCCGAATACCGTTCACATATGGTCAGTAAGCATGGCAATAACACATGCGATACTTGTCAGAAATCATTTTGTGATAAATACGCATTGAAAGAACACATGAAATTACACGAACAGAATTACTACGAGAATCGTAACATTAAATGTGAATTCTGTTCGAAGCGTTTCCTTCAAAtgctacatttaaaaaaacatataacCCGCATGCATGACAATAATCGTCAGAAATATATCTGCGATTTGTGCGGTAAAGAATTAAAGAGTATCACTGGTTTGAAGAATCATCATAGTGTCCATCAAGGTGATAAAATACATGCTTGTACCGTGTGTAATAAACGATTTGTACGTAAAGATACGTTAGTTTTACATATGCGTACACATTCTGGTGAGAAACCATACATTTGCCATCTGTGTGGTAAGGCTTATTCGCAATTAAGTCCGTTACGGATACATTTGAGGCAACATTCTGGCGAAAAACCGTATTCTTGCGATATCTGTCAAGATCGATTCGTTAGCAAGGGTGTACTTAGTATACATTTGAAAAGTAAACACCATATTTTGTGA
Protein Sequence: MKCRKFFKTNFNLRTHLLSVHEENRPFSCDICNKSFKQKGHLQRHHSTQHTDTTFGCNICQKQFKTIYNLRIHQRRHLKDRKRHLCNFCGRSFYDRYGFVRHLSMHEENYKQKRNYKCELCSSTFLQMEYLRRHIKSQHSDNRRKYTCELCGKEFVTPAGYKDHKDIHLGVKSFECVTCGKKFFKKFVLQIHMRTHTGEKPYTCTTCGKTFAHSSGLRVHLRSHNPEKPYKCNICNREFTWTSSKSIQCSECFKYFKTKRSLRIHSRSVHTQDRPYSCEICKKSFKQKYHLKVHQNVHIETVKFECDICEKKLTTSYSLKEHKRRHLKDYQYNCKLCGKLFVSKGDYNQHMDGQHNKRHLCNICGKSSYDRHALIRHMRRHEENYTENRNFECEYCPKKFSQMFHLKKHVKRMHDDNRQKYVCDTCGKELSSVQSLKQHKDLHLGVKPIHCGICTKTFAKRKTLVLHMRTHTGEKPYVCTVCGKAFSQRTPLTVHLRTHTGEKPENEAPSDIEEETETSTKLDLIPPKSKEKYEMAYRRFLAYRLQNDIKVCTETVMIRYFKDLSTKIKSSTLWSVYSMLRATLNQKEKIDISKFQKMRAFLKRQSQGYKAKKCRLLTKDQVQRFIFDAPDDKYLMIKVALIFGISGSCRRNELAQMHVNDIEDMGFKLLIKIKDNRTNEPRYFVVSDTYLDVYRKYVACRPKNFENSRFFFKYANGVGAKQVVGINTFGKIPQIVANYLRLPNAKEYTGHCFRLSGKVLGKVGIFLGKSVANNKSKQCPHCLKTFLNRRTLRKHLFVHTENRPYTCEMCDKSFKRKETLTRHRKNHDNATFYECDVCLKRIKTKLGFITHQRRHLKDFKEVCSICGGCFVTTAEYRSHMVSKHGNNTCDTCQKSFCDKYALKEHMKLHEQNYYENRNIKCEFCSKRFLQMLHLKKHITRMHDNNRQKYICDLCGKELKSITGLKNHHSVHQGDKIHACTVCNKRFVRKDTLVLHMRTHSGEKPYICHLCGKAYSQLSPLRIHLRQHSGEKPYSCDICQDRFVSKGVLSIHLKSKHHIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -