Basic Information

Insect: Mylabris variabilis
Gene Symbol: -
Assembly: GCA_037464815.1
Location: JAZBGW010000893.1:5621-9819[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 1.6e-05 0.00093 19.5 1.2 1 23 8 30 8 30 0.99

2 27 0.83 50 4.6 0.7 1 23 35 58 35 58 0.92

3 27 1.1e-05 0.00064 20.0 0.3 2 23 63 84 62 84 0.97

4 27 9.3e-06 0.00056 20.2 1.8 2 23 92 114 91 114 0.97

5 27 0.0039 0.23 11.9 0.3 1 23 121 143 121 143 0.95

6 27 1.2e-05 0.0007 19.9 0.9 1 23 149 171 149 171 0.95

7 27 3.3e-06 0.0002 21.6 0.7 1 23 177 199 177 199 0.98

8 27 0.0031 0.19 12.2 0.7 1 20 205 223 205 224 0.93

9 27 0.00011 0.0063 16.9 0.9 1 23 223 246 223 246 0.93

10 27 1.1e-07 6.8e-06 26.2 4.9 1 23 252 274 252 274 0.99

11 27 2.6e-05 0.0015 18.8 1.7 1 23 280 302 280 302 0.98

12 27 0.00011 0.0066 16.8 0.2 3 23 310 331 308 331 0.92

13 27 2.2e-05 0.0013 19.0 2.6 3 23 337 357 335 357 0.95

14 27 0.029 1.7 9.2 4.5 2 23 368 390 367 390 0.96

15 27 0.00092 0.055 13.9 0.1 1 23 397 419 397 419 0.98

16 27 3.6e-06 0.00021 21.5 0.8 1 23 425 447 425 447 0.98

17 27 8e-08 4.8e-06 26.7 0.2 1 23 453 475 453 475 0.98

18 27 2.1 1.3e+02 3.3 0.5 1 11 481 491 481 493 0.90

19 27 1.2e-05 0.00071 19.9 4.8 1 23 496 518 496 518 0.98

20 27 0.00015 0.009 16.4 4.4 1 23 524 546 524 546 0.98

21 27 2.4e-05 0.0014 18.9 1.0 1 23 552 575 552 575 0.97

22 27 1.5e-05 0.00089 19.5 1.9 3 23 581 601 580 601 0.99

23 27 3.7e-05 0.0022 18.3 5.7 1 23 611 634 611 634 0.98

24 27 0.0003 0.018 15.5 0.2 1 23 641 663 641 663 0.98

25 27 0.00036 0.021 15.2 1.4 1 23 669 691 669 691 0.98

26 27 8.9e-06 0.00053 20.2 0.5 1 23 697 719 697 719 0.98

27 27 0.47 28 5.4 3.4 1 23 725 748 725 748 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	1.6e-05	0.00093	19.5	1.2	1	23	8	30	8	30	0.99
2	27	0.83	50	4.6	0.7	1	23	35	58	35	58	0.92
3	27	1.1e-05	0.00064	20.0	0.3	2	23	63	84	62	84	0.97
4	27	9.3e-06	0.00056	20.2	1.8	2	23	92	114	91	114	0.97
5	27	0.0039	0.23	11.9	0.3	1	23	121	143	121	143	0.95
6	27	1.2e-05	0.0007	19.9	0.9	1	23	149	171	149	171	0.95
7	27	3.3e-06	0.0002	21.6	0.7	1	23	177	199	177	199	0.98
8	27	0.0031	0.19	12.2	0.7	1	20	205	223	205	224	0.93
9	27	0.00011	0.0063	16.9	0.9	1	23	223	246	223	246	0.93
10	27	1.1e-07	6.8e-06	26.2	4.9	1	23	252	274	252	274	0.99
11	27	2.6e-05	0.0015	18.8	1.7	1	23	280	302	280	302	0.98
12	27	0.00011	0.0066	16.8	0.2	3	23	310	331	308	331	0.92
13	27	2.2e-05	0.0013	19.0	2.6	3	23	337	357	335	357	0.95
14	27	0.029	1.7	9.2	4.5	2	23	368	390	367	390	0.96
15	27	0.00092	0.055	13.9	0.1	1	23	397	419	397	419	0.98
16	27	3.6e-06	0.00021	21.5	0.8	1	23	425	447	425	447	0.98
17	27	8e-08	4.8e-06	26.7	0.2	1	23	453	475	453	475	0.98
18	27	2.1	1.3e+02	3.3	0.5	1	11	481	491	481	493	0.90
19	27	1.2e-05	0.00071	19.9	4.8	1	23	496	518	496	518	0.98
20	27	0.00015	0.009	16.4	4.4	1	23	524	546	524	546	0.98
21	27	2.4e-05	0.0014	18.9	1.0	1	23	552	575	552	575	0.97
22	27	1.5e-05	0.00089	19.5	1.9	3	23	581	601	580	601	0.99
23	27	3.7e-05	0.0022	18.3	5.7	1	23	611	634	611	634	0.98
24	27	0.0003	0.018	15.5	0.2	1	23	641	663	641	663	0.98
25	27	0.00036	0.021	15.2	1.4	1	23	669	691	669	691	0.98
26	27	8.9e-06	0.00053	20.2	0.5	1	23	697	719	697	719	0.98
27	27	0.47	28	5.4	3.4	1	23	725	748	725	748	0.91

Sequence Information

Coding Sequence: ATGCATacaaaagtcaaaaattaCGAATGCGATATATGCgagatgaaattttatacgaatgaaagtttaaaaatacataaacgACGCCATAAAGATTGCCGTTTCATTTGTGATACATGCGGTGATAGTTTTATATTGATTTGTGATTATAAACAACATCTAGAAAATGAACATAATGTAATCAGTGTTTGTAATGTTTGTGGTGAATCGTTCACCaatcaattacaattagatCAACATATGAAGCTACATAAACAGAATCAACGTGATATTAAATGTGAATTTTGTCCGAAAACGTTTGCACGAATCAGACATTTAAAGATACATATTAGACGGATGCATAATGAGAATCGTGAAATACATATTTGTGATTTGTGTGGGAAAGAATTGACAACACTACGAGCTTTAAATGAACATAAAGACATCCATTCCGGTGTCAGATCGTTTGAATGCATCACATGTGGAAAGAAATTTGTTCAGAAACGTACTTTAGTAATACATATGAGGACGCATACCGGTGAAAAACCGTACACTTGTGATATTTGCGGTAAAAAACTATCACAACGTACTGCATTGACACGACATTCACGTATACATACCGGTGAAACACCGTATAGTTGTAATGTTTGTGGGAAAAGGTATCAACAACAAACATTAGAAACACACCATCAATGTCCGCAGTGTTTAAGagtatttaaaaagaaaccaTTGTTAAGGAGACATTTACTGTTTGTACATACCGAAAATCGACCATAttcttgtaatatttgtaagaaatcatttaaacaaaaagacCATTTAAAAGTCCACCAGAATACGCACGATAAAACGACGAAATTTGAATGTGATATTTGCCAGAAAACAACAGCCACTTATAGTAgtttaaaattacataaacGTCGCCATTTGAAGGACTATCGAATCAATTGTGAGATTTGTGGACAAGGTTTCGTATCGAAAGGTAGTTATAAGAACCATATGGAAGGCAAACATATCCGTACACATCTATGTAACATTTGTGGTAAATCATTCTATAATAAACACGGACTAGATTTACATATGAAATTACACGAGGAAAACTATATGGAGAATCGTAATATTAAGTGTGAATTTTGTCCGAAAACATTTCTACAAATGTTACATTTGAAGCACCATATCAAACGGATGCACAACGATAATCCACAGAAATACATATGCGATCTATGTGGTAAAGAGATAACGAGCCTTAAAGGTCTAAGGGACCACAGAAATATTCATTTAGATGTGAAATCGTTTGAGTGTGGTACGTGTGGAAAGAAATTCGTTCGAAGATTAACCTTGGTAAACCATCTTAGAACGCATACTGGTGAGAAACcgtatatttgtaaaatttgtggCAAGGCTTTCACACAACAAAGTCCATTAACAATACACCTACGGATACATAGTGGTGAGAAACCGTacaattgtaatatttgtagTGAGAAATTCGTTAAAGATCGTCCATATTCctgtaatatttgtaataaatcttATAAGCATGttagttatttaaaatcacatcaaaataaacattatgGCAGTGCTAAATACGAATGCGATATATGCCAAAAACGGTTAAcaagtaattataatttaaagacACATAAAAAACATCATTTACAAGAATATCAATACAGTTGTGAATTTTGTGACAAAGGCTTTATAACAAACaatgaatataaaaatcatATGGAAAGTACGCATAATAGAACAAATCTGTGTAACATTTGTGGTCAATCGTTTTACAATAAACACGGATTAAATCTACATATCAAACGACACGCACAGGACTACAGAGAGAAACGTGATTTTAAATGTGAATTTTGTCCAAAAACCTTCATGCAATTCTTCCATTTGAAGAAGCACATTAGAAGGATGCACAATGATAATCGACAGAAGTATGTCTGTGATTTGTGTGGTAAAGAAATCACAACGCTCACCGGCTTGAAACAGCATAAATTAACGCATACGGGCGTGAAACCATTCGAATGCGCTACCTGTGGGAAGAAGTTTTTGAagaaacaaacattaaaaaatcatgTAAGAGTACACACCGGTGAGACACCGTTCGCTTGTAAGATTTGCGAAAAGAAATTCTCCCAGTACGGTCCATTATTGGTACACCAACGTACGCACACTGGTGAGAAACCgtataattgtaatatttgcGAAGAGAGATTTATCAGTAAGCAAGCATGTGATTATCATCAAAAGAAGAAGCATTTGAAAGTGTAg
Protein Sequence: MHTKVKNYECDICEMKFYTNESLKIHKRRHKDCRFICDTCGDSFILICDYKQHLENEHNVISVCNVCGESFTNQLQLDQHMKLHKQNQRDIKCEFCPKTFARIRHLKIHIRRMHNENREIHICDLCGKELTTLRALNEHKDIHSGVRSFECITCGKKFVQKRTLVIHMRTHTGEKPYTCDICGKKLSQRTALTRHSRIHTGETPYSCNVCGKRYQQQTLETHHQCPQCLRVFKKKPLLRRHLLFVHTENRPYSCNICKKSFKQKDHLKVHQNTHDKTTKFECDICQKTTATYSSLKLHKRRHLKDYRINCEICGQGFVSKGSYKNHMEGKHIRTHLCNICGKSFYNKHGLDLHMKLHEENYMENRNIKCEFCPKTFLQMLHLKHHIKRMHNDNPQKYICDLCGKEITSLKGLRDHRNIHLDVKSFECGTCGKKFVRRLTLVNHLRTHTGEKPYICKICGKAFTQQSPLTIHLRIHSGEKPYNCNICSEKFVKDRPYSCNICNKSYKHVSYLKSHQNKHYGSAKYECDICQKRLTSNYNLKTHKKHHLQEYQYSCEFCDKGFITNNEYKNHMESTHNRTNLCNICGQSFYNKHGLNLHIKRHAQDYREKRDFKCEFCPKTFMQFFHLKKHIRRMHNDNRQKYVCDLCGKEITTLTGLKQHKLTHTGVKPFECATCGKKFLKKQTLKNHVRVHTGETPFACKICEKKFSQYGPLLVHQRTHTGEKPYNCNICEERFISKQACDYHQKKKHLKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -