Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00027 0.39 10.7 1.0 15 43 12 37 4 38 0.87

2 10 0.11 1.5e+02 2.4 1.2 18 29 44 55 39 65 0.81

3 10 0.036 51 3.9 3.7 17 38 71 89 55 94 0.76

4 10 0.13 1.9e+02 2.1 3.9 5 23 88 105 84 108 0.86

5 10 0.0038 5.5 7.0 2.7 10 29 118 137 112 147 0.77

6 10 0.021 30 4.7 3.9 14 44 154 181 140 181 0.84

7 10 0.0014 2 8.4 0.1 14 28 184 198 182 205 0.79

8 10 0.017 24 5.0 1.9 18 38 216 233 212 235 0.85

9 10 3e-05 0.043 13.8 1.6 5 40 232 263 230 271 0.88

10 10 0.0053 7.6 6.6 1.2 18 44 272 295 264 295 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00027	0.39	10.7	1.0	15	43	12	37	4	38	0.87
2	10	0.11	1.5e+02	2.4	1.2	18	29	44	55	39	65	0.81
3	10	0.036	51	3.9	3.7	17	38	71	89	55	94	0.76
4	10	0.13	1.9e+02	2.1	3.9	5	23	88	105	84	108	0.86
5	10	0.0038	5.5	7.0	2.7	10	29	118	137	112	147	0.77
6	10	0.021	30	4.7	3.9	14	44	154	181	140	181	0.84
7	10	0.0014	2	8.4	0.1	14	28	184	198	182	205	0.79
8	10	0.017	24	5.0	1.9	18	38	216	233	212	235	0.85
9	10	3e-05	0.043	13.8	1.6	5	40	232	263	230	271	0.88
10	10	0.0053	7.6	6.6	1.2	18	44	272	295	264	295	0.89

Coding Sequence: ATGATTATTTTCAGGTATCAACGAATAACTGTTGAATCAAATCAGTGttatgtttgtttaaaaatctttaaacGTACCCAACTATTAAGAAGACATCTTCTAACGGTGCATACAGATAATCGTCCATACACTTGCGATATCTGTAACAAATCCTTCAAGCATAaagattatttgaaaatacataaaattaaaCACGACAATTCTGTTGAATTTGAGTGTGATATTTGCCAGAAGAAATTTGCAACCAAACATAATCTAATATGCCATCAACGGCGCCATTCGAAAGACTTTAAAAGGATCTGCAATATTTGCGGTAGTGGTTTTCTGTTCGAATCCAGTTATCGGACACATATGGAAAACCGTCATGGCAATAATACGTGCAATATTTGCCAGAAATCGTTCTACAACAAATACTCATTACGAGATCATATGAAACTGCATGATCAGAACTATTATGAGAATCGTAAAATTAAATGTGAATTTTGCCCGAAAAAGTTTATACAAAGTTTACATTTAAATGAGCATATGAAAAAGATGCACAATGATAATCGTCAAAAATACATCTGTGATTTTTGTGGCAAAGAAATAACATCATTGACAAGCTTAAAGGAGCATAGAAACCTACATATGGGTGTGAAATTGTTTGAATGTAAAACGTGCGGgaggaaattttcgaaaaagaaAACTTTAATTAACCACACACGGATACATTCGAATGAGAAACCGTTCAGTTGCAATATTTGCGGCAAAGATTTTAAACAACAGAGCACACTGATCAATCATTTACGGATACACAACAGTGATAAACCGCACAATTGTAATGTTTGTGAAGAGAAATTCATTAGTAAACAATCGCTTGATTATCATTTGAAGAAGAAACATCAGAAATTGTAG
Protein Sequence: MIIFRYQRITVESNQCYVCLKIFKRTQLLRRHLLTVHTDNRPYTCDICNKSFKHKDYLKIHKIKHDNSVEFECDICQKKFATKHNLICHQRRHSKDFKRICNICGSGFLFESSYRTHMENRHGNNTCNICQKSFYNKYSLRDHMKLHDQNYYENRKIKCEFCPKKFIQSLHLNEHMKKMHNDNRQKYICDFCGKEITSLTSLKEHRNLHMGVKLFECKTCGRKFSKKKTLINHTRIHSNEKPFSCNICGKDFKQQSTLINHLRIHNSDKPHNCNVCEEKFISKQSLDYHLKKKHQKL

Sequence clustering based on sequence similarity using MMseqs2