Mvar015303.1
Basic Information
- Insect
- Mylabris variabilis
- Gene Symbol
- -
- Assembly
- GCA_037464815.1
- Location
- JAZBGW010027198.1:1-662[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.3e-07 0.00021 20.9 0.0 2 45 11 54 10 54 0.94 2 3 2.7 2.4e+03 -1.7 0.0 21 28 94 101 94 104 0.83 3 3 0.32 3e+02 1.2 0.0 22 35 166 180 165 183 0.83
Sequence Information
- Coding Sequence
- ATGTCGAAACGTAAATATAACACTTGGCGGCAAGAAGATATGGATGAAGccttaagaaaatataaagatagtaaattgaaatttaatgaaGTTTGCCGTGATTATAAAATACCGAAGCCCACATTCAGAAGACATCTGAGGGGTTTAAATACACATAAAAGAAGCGGTAAACCCATAGAATTAACTTCCGTAATGGAAGCAGAATTAGTTCGGCAGGTACTAGAACTAGAAGCTTGTTTCTTTGGTTTAACCATTAAAGACTTACGCAATTTAGCCTTTCAGTTAGCAGAACGATATGGTATCGAACATCGTTTTAATACAAACACTCAGCTAGCTGGATGGAAGTGGCATTATAAATTACTTCAACGTCATCCCGAGATTTCGTTGAGGACTCCCGAACCAACATCTATGGCGCGTTGCAGAGGTTTCACCAAACATATAGTTATGGATTTCTTTGATAAATATGAAAGTCTCATTGATACCGAAAAGTTTACTGCATCTCAAATATACAACGTTGATGAAACCAGTCTCAGCACAGTTCATAAGCCTCCTAAGGTATTAGCACGAAAGGACAAACACCAAATTGGTGCAATAACAAGTGGCGAACGTGGCACGAACACTACATGTGTTTGTTGTATGAACGCGGGCGGCGACTTTGTACC
- Protein Sequence
- MSKRKYNTWRQEDMDEALRKYKDSKLKFNEVCRDYKIPKPTFRRHLRGLNTHKRSGKPIELTSVMEAELVRQVLELEACFFGLTIKDLRNLAFQLAERYGIEHRFNTNTQLAGWKWHYKLLQRHPEISLRTPEPTSMARCRGFTKHIVMDFFDKYESLIDTEKFTASQIYNVDETSLSTVHKPPKVLARKDKHQIGAITSGERGTNTTCVCCMNAGGDFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -