Mvar014440.1
Basic Information
- Insect
- Mylabris variabilis
- Gene Symbol
- -
- Assembly
- GCA_037464815.1
- Location
- JAZBGW010020422.1:1-1230[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-11 1e-08 34.7 0.0 2 41 11 50 10 52 0.94 2 2 6.7 6.1e+03 -3.0 0.0 33 43 121 131 121 131 0.78
Sequence Information
- Coding Sequence
- ATGGCttgtaaaaaaagaaaaacgtggTGTCCAGAGGCTATGAAAAAAGCTTATTTTGCTGTGAAAAATCAAGAAATGGGATATCTTAAAGcgtcaaaaatatttaatgttcCTAAAAGTACATTAGAAGACTATATCAAAAGAAATACTGATATAGATGAACTGCTGCAAGGTAAACTTGGCCGAAAACCTACTTTCAATCAAGAAATTGAAGATGAATTAGTTAAATACTGCATAGAAATGGTCAATAGGTATTATGGTTTACGCGCATCAGATATAAGAGTAATGGCATTCCAATTAGCTATAAGGAACAACATTCCTCATCAGTTTTCTGATAAAGGGCGAGCTAGTAAAAAGTGGTTGTCGGCATTTTTGAGAAGACATCCACAATTAGCATTTCGTACACCTGAAGCTACTACAGCTCTTCGCGCTAAAGGATTTACTAAAGAAAAGCt
- Protein Sequence
- MACKKRKTWCPEAMKKAYFAVKNQEMGYLKASKIFNVPKSTLEDYIKRNTDIDELLQGKLGRKPTFNQEIEDELVKYCIEMVNRYYGLRASDIRVMAFQLAIRNNIPHQFSDKGRASKKWLSAFLRRHPQLAFRTPEATTALRAKGFTKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264438;
- 90% Identity
- iTF_01264344;
- 80% Identity
- -