Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4.1e-12 3.7e-09 36.1 0.0 1 44 16 59 16 60 0.94

2 3 6.2 5.7e+03 -2.9 0.0 2 14 73 86 73 87 0.69

3 3 6.1 5.5e+03 -2.9 0.0 17 22 134 139 125 139 0.80

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4.1e-12	3.7e-09	36.1	1	44	16	59	16	60	0.94
2	3	6.2	5.7e+03	-2.9	2	14	73	86	73	87	0.69
3	3	6.1	5.5e+03	-2.9	17	22	134	139	125	139	0.80

Coding Sequence: ATGCCGAACCAATACAAAAGAATATGTCCGAACAGAGCGAACTGGACAGAAGAGCAATTGAAATATGCGATATCTTCAGTTAAAACTGATGGATTCTCCGTCAGAAGGGCAGCTATTACTTTTGGTATTCCCAGGAAAACCTTAGAACgacgattaaaaataaataacgagaAAAAGCATAAACTTGGCCCAGATTCCGTTTTTGGCGGTGCCCATGAAGATCGTTTAGTTCGACATATAAAAGCAATTCAGAAAAGTGGATTTCCTTTAACCCGCGACGATTTACGAAGCATAGCCTACAGATTTGCTGAACAGTTGGGCCTTAAACACAGATTTAATAGACAGTCAGGAAAAGCTGGCTACGTGTGGCTTCAAGCGTTTATCAGTAGACATCCAGATGTTTCAATAAGAAAGGCAGAAGGTGTGTCAATAGCGAGGTGCAGTGCAATGAATCGACAAGCTGTTACTGCTTATTTTGAACTACTACAAAAGACTCTTGTAATGCTGAAGGAAGTTTCCTTCCACCAGTTGCCATAA
Protein Sequence: MPNQYKRICPNRANWTEEQLKYAISSVKTDGFSVRRAAITFGIPRKTLERRLKINNEKKHKLGPDSVFGGAHEDRLVRHIKAIQKSGFPLTRDDLRSIAYRFAEQLGLKHRFNRQSGKAGYVWLQAFISRHPDVSIRKAEGVSIARCSAMNRQAVTAYFELLQKTLVMLKEVSFHQLP

Sequence clustering based on sequence similarity using MMseqs2