Mvar010905.1
Basic Information
- Insect
- Mylabris variabilis
- Gene Symbol
- -
- Assembly
- GCA_037464815.1
- Location
- JAZBGW010008822.1:2407-4466[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.5e-12 5.9e-09 35.4 0.0 1 39 165 204 165 208 0.90 2 4 1.7e-13 1.6e-10 40.5 0.1 1 39 219 257 219 260 0.95 3 4 2.8e-19 2.6e-16 59.0 0.0 1 45 274 319 274 319 0.98 4 4 7.9e-17 7.2e-14 51.2 0.0 1 39 326 365 326 369 0.93
Sequence Information
- Coding Sequence
- ATGAGTAGTAATGGAATTATAACAGGCCAGaCAATCTTCTCTCATTTTGGTGTCGATACAGACGATTTCCCACCAGAACCGCCAGCACCCTCAGCAATACCAGTTGGACACGTTGATATGCAAGAGCATTCACCAACACGtacattattaacaaatacaaTCCATAGGACTGATTTATCcgaatctaataataaattttcggATGTTAAGAAAGAAGTAgatgtaaaatttgaaacgtTGCGTTCATCATACGATCAAGATTCATTATTAGAAATGGACTCGCATATGTCAGGACCTGATCATTCGATGGATAGTCATGATGATGAACAAAGTATGCATCAAATGATGGTCACACCGGAACTGATGGGCATTATGCCCGGTGTTTCTAGTAGATTAGATTTAAGTAACGAAGTACCTGTATCAAAAAGTAATGGCCATTCGGATAATTCACAACATGCGGCACGATCGCACGGTGGTGGACCCAAAACATGGACTCAGGAAGATATGGACATGGCCTTAGACGCTTTACGAAACCACAATATGAGTCTAACTAAaGCGTCAGCGACTTACGGTATTCCCTCCACTACACTCTGGCAGCGTGCCCATCGATTAGGTATAGATACACCAAAGAAAGAAGGTCCGACAAAGTCTTGGACTGAAGAGAATCTGAATAATGCTTTAGAAGCATTGAGAACTGGAACTATCTCGGCTAATAAAGCTAGTAAAGCTTACGGCATTCCAAGTAGTACGTTGTATAAGATAGCGAGAAGGGAAGGTATACGATTGGCGGCGCCTTTCAACGCAGCACCGACCACCTGGACACCTGAAGATTTAGAAAAGGCTCTAGAATCGATCAGATCCGGTCAAACGTCAGTACAAAAAGCATCAACCGAATTCGGCATTCCTACTGGTACACTGTATGGTCGATGTAAACGTGAAGGTATTGAATTGTCACGTTCAAATCCGACACCATGGTCAGAAGATGCAATGGGTGAAGCTTTAGAAGCTGTTAgATTAGGTCATATGTCGATTAATCAAGCTGCCATCCATTATAATCTGCCTTATTCATCTTTATATGGTAGATTTAAAAGGGGCATTAAATACGAATCGGATAATATTGAACCAAATTCGGATAGTCAGTCACAATTAGATGGGCATACGTTTGGTATTGAATATGCGAGTACACATCAACTCCAAtatcaaaatcaaacaaatagctga
- Protein Sequence
- MSSNGIITGQTIFSHFGVDTDDFPPEPPAPSAIPVGHVDMQEHSPTRTLLTNTIHRTDLSESNNKFSDVKKEVDVKFETLRSSYDQDSLLEMDSHMSGPDHSMDSHDDEQSMHQMMVTPELMGIMPGVSSRLDLSNEVPVSKSNGHSDNSQHAARSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESDNIEPNSDSQSQLDGHTFGIEYASTHQLQYQNQTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -