Mmin024330.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- PRDM7
- Assembly
- GCA_034621355.1
- Location
- JAXAVZ010000080.1:1775710-1814916[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.039 2.7 9.3 7.6 1 23 558 580 558 580 0.99 2 9 0.033 2.3 9.5 1.7 1 23 587 610 587 610 0.94 3 9 0.36 25 6.3 1.0 1 23 642 664 642 664 0.97 4 9 0.001 0.072 14.3 3.3 1 23 669 692 669 692 0.98 5 9 0.0016 0.11 13.7 0.3 2 23 697 719 696 719 0.94 6 9 3.4 2.4e+02 3.2 0.2 3 20 732 749 732 751 0.89 7 9 2.2 1.5e+02 3.8 0.9 2 23 788 810 787 810 0.93 8 9 0.00085 0.059 14.6 0.9 2 23 851 872 850 872 0.97 9 9 2.3e-06 0.00016 22.6 0.1 1 20 879 898 879 902 0.95
Sequence Information
- Coding Sequence
- ATGAGTCATTTCTTGCGGAAGAAGCAGCGCATCAACTACGCAGAGCCGCCGGAGCCCAATATGGACGAGTACATTTTTTGTTCTCGCTGCAAGGACTACGTGTACGAGTACTGCTCTATACACGGCGAGCTGCTCGTCGTACTCGATGACAAGGTGCCATCGAAGTCGCCCTACCCCCCCGTGGTCCCGCGCGCCGCCCTCACCATCCCGCACGTGTTCCTGCACATCGCTCCCTCCACTATACCAGGCGCGGGTCTGGGAGTGTTCTCCACGCTGACGCTGCCCAGCGGCGTGCGGTTCGGTCCGTACCGCGGCAACAAGAGCACGGAGATCACATCCGACTACTGCTGGCAGCTGTACGACGGCAACGGCAAGCCCTCAAAAGTCGTAGACGCCGGGGACGCCAACAACTCGAACTGGATGAGATACGTGAATTGCTCACGTCACTGGAGCGAGCAAAACCTCGTAGCGTTCCAGTACTTCGGGGAGATTTATTATAGGACCGTCAAAATAATCCCTCGTTACACAGAGTTGCTCGTGTTCTACGGCGCCGAGTTTGCAAACAGGCTGCGCGTTAATATTAGGTCATATAACTCGACTCTGCCACTCGCAGATACTATACACCTACAAGTTAAAAAAAGCGCAGTGACATCGCAGAACAATGTTCCCGGTGATCATAAACACAAAGAATCCTTGCAAAGTAATTTGAATGTTCGCACAAATGACTGCAATATTGCGCGTGAACAACAAacagaACACGTGGTCAAAACTAATTTCTGCTTGATATGCTTGGAAACTGAGAGCAAGTTGTACCCGTTGAGCCAGTACAGCTTGGGAGAGGCTTACCAACAATTGACAGGAAAATTGACACTAAGCAATATAAACTATGTGCCGGAGTTTTGTCCTGAATGCACACAGCGACTGATAAACTGCAGCAAGTTCAGGGACAAGAGCTTGAGAAGTTATAATCTACTGTTGGATCTGTTTGAGAACAATCAAGTGtttTCGACTGCAGACATAAAAGCTATCAACAGAACAAACTACCAACTAACATCAAATATAAGCAAAACGACACACGATCCAGATCATTGCGACTTATATATAGTACATGATAAACAAGAGGACAtcaaaatagaattaaaaataatagacagTGCACCCATAGACCAAAACATAGACGAAAACGAAACATCAAAAGTCACAATTGACCTAGAACCTAAAACAGAAGCAAACGATTTTAAAAGCGATGACGAATTTCTGATAGATGACATAGATAAGGATACTGATTTTCTCTGTGATGACAAAAAAGTAAAGAAGCTAAATGTTACAGAAAAAATTGATGAATTCAATAATGTAAACGATTCAATCGAATTGAACACAGACAATGATTGGGACTTCTTAAAAGATGATGAAAGTGAAGTTGAAATAGttgacaaaaagaaaacaaaaaccaTCAATAAGACAAAGAAAACGAAAAAAGTCGCagccaaaaaagaaaaaagtcagCCAAAACCGAAAACGACGAAAGCGAGAGTCAAAAAAGAGACAAAACAGACTAAAACTGAAAATCTAGATTATCTGAAACAGTTTCTAGTCACCAAGTTGAGTCACGAGGAGCAGTTGGCCGAGATACAGAAAAGGAAAGAAACTGACAATTTCAAGAACTCTCCGTACAAATGTATGAAATGTTTTAAAGGGTTCTGCAATGCTACAACTTATCATACTCACATGGAAAAACATACCAATAAATTCGGCCAATTTGTATGTGAAATATGTGGCATCCACATAAAGAGCAACCATAGACTAAGGAACCATGTGGTCAAAAACCACAGCATGAGGTACAGCTGCTACAGCTGTCCACTGGTCACTAACCACAACAACCATAGACTAAGGAACCATGTGGTCAAAAACCACAGCATGAGGTACAGCTGCTACAGCTGTCCACTGGTCACTAACCACAAAGAATCAGCGCAAAATCACGAGCGTTGGCACAACGGCGCCAAGTTCAAATGCCAACATTGTAATGAGGAATACAGCAAGAAAACGTCATACCTGTCGCATCTACGCATATGGCATCCCTCAGACGTGGTGTGCACTCTGTGCGGGTTCTCCTTCATCAACGAGAGGGGGTTGCGCATGCACATCAACTTCAAACATCGCTTCGAAGACGTGCAGAACCCGTCCGGTCCACTGTGTGAGCCCTGCAACATACGTTTCGCGTCCCACACCGCCTACAAGCAACATTTAGACGTGTCTCCGAAACACGCCGACGGATCCGCCTTGCAACGAAATACTCCAAAAATAAGACACGGCAAACGAAAACAGTACGGCACCAAGACCAAGGAAGACGTAGAGACTGTTGAATGTGAACAATGCGGTAGTCAATTCAAAGGCTTCAAGCTATACGCGTATCACTTCAAGAGATTCCACCCGGACAAGAAGCGCACGCAGTATCCACCGCACTCGCCGCAGCGCTTCCTGTGCGATCAATCATCGTTGCGCGTTGAGAGATCACATGCTCACCCACTCTGGCAAGAAGGAGTTCCAGTGCAGTGCGACATATGCAGCAGGAAGTACTACCTCAAGACCAACCTCATAACGCACCTCAAGTCTCACAGCGAGCTGCAGCCCACCTACCCGTGTCCCATATGTGGCAAGAGCTTCACTAACAAGGCCAACACCAATCGACATATATGGATTATTCACCTGTACATGGTAATTATTTACTGA
- Protein Sequence
- MSHFLRKKQRINYAEPPEPNMDEYIFCSRCKDYVYEYCSIHGELLVVLDDKVPSKSPYPPVVPRAALTIPHVFLHIAPSTIPGAGLGVFSTLTLPSGVRFGPYRGNKSTEITSDYCWQLYDGNGKPSKVVDAGDANNSNWMRYVNCSRHWSEQNLVAFQYFGEIYYRTVKIIPRYTELLVFYGAEFANRLRVNIRSYNSTLPLADTIHLQVKKSAVTSQNNVPGDHKHKESLQSNLNVRTNDCNIAREQQTEHVVKTNFCLICLETESKLYPLSQYSLGEAYQQLTGKLTLSNINYVPEFCPECTQRLINCSKFRDKSLRSYNLLLDLFENNQVFSTADIKAINRTNYQLTSNISKTTHDPDHCDLYIVHDKQEDIKIELKIIDSAPIDQNIDENETSKVTIDLEPKTEANDFKSDDEFLIDDIDKDTDFLCDDKKVKKLNVTEKIDEFNNVNDSIELNTDNDWDFLKDDESEVEIVDKKKTKTINKTKKTKKVAAKKEKSQPKPKTTKARVKKETKQTKTENLDYLKQFLVTKLSHEEQLAEIQKRKETDNFKNSPYKCMKCFKGFCNATTYHTHMEKHTNKFGQFVCEICGIHIKSNHRLRNHVVKNHSMRYSCYSCPLVTNHNNHRLRNHVVKNHSMRYSCYSCPLVTNHKESAQNHERWHNGAKFKCQHCNEEYSKKTSYLSHLRIWHPSDVVCTLCGFSFINERGLRMHINFKHRFEDVQNPSGPLCEPCNIRFASHTAYKQHLDVSPKHADGSALQRNTPKIRHGKRKQYGTKTKEDVETVECEQCGSQFKGFKLYAYHFKRFHPDKKRTQYPPHSPQRFLCDQSSLRVERSHAHPLWQEGVPVQCDICSRKYYLKTNLITHLKSHSELQPTYPCPICGKSFTNKANTNRHIWIIHLYMVIIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -