Mmin024738.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- JAXAVZ010000166.1:850941-861350[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0052 0.36 12.1 0.2 1 23 306 329 306 329 0.93 2 10 1.5 1e+02 4.4 1.4 1 23 361 384 361 384 0.79 3 10 1.5 1e+02 4.4 1.4 1 23 420 443 420 443 0.79 4 10 2.2e-05 0.0015 19.5 2.9 1 23 475 497 475 497 0.98 5 10 0.062 4.3 8.7 0.0 2 23 505 525 505 525 0.91 6 10 0.0013 0.087 14.0 1.1 1 21 531 551 531 556 0.94 7 10 0.013 0.91 10.8 2.0 3 21 578 596 576 601 0.90 8 10 0.062 4.3 8.7 0.0 2 23 626 646 626 646 0.91 9 10 0.0013 0.087 14.0 1.1 1 21 652 672 652 677 0.94 10 10 0.005 0.34 12.2 0.8 3 21 740 758 739 763 0.91
Sequence Information
- Coding Sequence
- ATGGAAGACTACAGCAAATTAGTGTTAAGAAGAATATGCTGTACGTGTTTAAGCGTTGACAGGAATCTCACCCAATTGTGTAAATTAAAGGATGGTGTGAATAACTTATTCATCCTACTTTCATCCGATCCTGATGCATACAAGGCAATGTTCAGTAGAGACGCCACACATTTATACATCTGCTGGGAGTGTGAGCACTTCATGAGGCGACAGACGAGGTTCAGGGAGCAGGTCTGCGTCGCTCAGAAACAGATTACTCAGATTATTGATGGAGAAATTGATtTAAACCCAGAATGTAGCTTATCAACATTAACAAGAGTCCATCAAAACGCATACAccaataaaattgtatacaatAGTGATTTTATAGACAATTTCATCGATTGCGGACCAGacattgatattaaaaaagAGCCAGAACTAAATATATCTTTAAGCGACAATGAATTAGCGAATACAAGTGATGAAGACATCACCACAGATgtaattgatcaaataaatgttatagacaataaattagaaataaaacctcttttaacaaataagaggaaattaaaacaagatatCCCTAACAAAAGAgctaaaagtaaaagaaaagttAGAAAGGAAAATGATTCAATTGAGAAAATAGATAAGACTGAATTGATAGatgatataaaaatagataaggTATTTGAATCGTCAATTAGAAATGTAAAAATTGAAATGGATATAGAAAATGAAGAAAATCGTGCTGAGGAAAatgaaactattaaaaatttaaatatagaattaaaaaaacagaaaacatGGAAAGTGAAAAATGTAGAGGAATTCATAAAAGAAGAAGGGTTTTCAAGAATTAATATGACTGAAGAAGAATTGTTGGATAGCATTGAAAAGAGGAGGTCGGAAGAAGATTTTGTACTTGCATTCTACAAATGTAAATCTTGTGTTGAAGTGTTTAAGGATCAAATTGAGTTGGAGGAACATAATGCTAAGTTACATGTACAGAAGCCCAAATTCGTGCAATGCGACATTTGCCAAGTGTACATCAAGTTCTGGTGGCTACCGGAGCACAGGAAGGAGCACTACCACAAATATCAATGCGATCATTGCTCGCGGGTGTGCTACGCTGTACTGGATGTGCTGCAGCATTTGAGGGATGAGCATTCCGTTGCAGATGCACTCACACCCGCCATATTGAGAAAGGTAAGTATTGTCAAGTTCCTCAAGTTGTGTTGGTTGCCACAGCACAGGAAGGAGCACTACCTCAAATATCAATGCGATCATTGCTCGCGGGTGTGCTACGCTGTACTGGATGTGCTGCAGCATTTGAGGGATGAGCATTCCGTTGTTGATGCACTCACACCCGCATTACACATTGCTGCAAGAAGCAGATACCTCCGTTACAAACATATACTGAAACTGCACAGAGAAGGTCATAAGTGTGCGACTTGCGGGAAAACGTTTGCTTTCAAGAACACACTCAACAAACACCAACTGATTCATCTAGAACCGCAACCCTCCGAGCAATGTCCCGTGTGCGGTAAGATGGTGCGTCGCGAGGGAGCGAGAGCGCATGCGCGCATTCACACCGCTCGCACCGCCTTTGAGTGCGCCGCCTGCGACAAGCGCTTCGTGTCGCGAGACTCCTTCGAGAAGCATCTCAAGTACTCCAGCAAGCACGCCGTGTCCGACGTGCACAAGTTAGTAGCTACTAACAGCCCTCCGAGCAATGTCCCGTGTGCGTGCGCCGCCTGCGACAAGCGCTTCGTGTCGCGAGACTCCTTCGAGAAGCATCTCAAGTACTCCAGCAAGCACGCCGTGTCCGACGTGCACAAGTTAGTAGCTACTAACAGCCCTCCGAGCAATGTCCCGTGTGCGCCCTCCGAGCAATGTCCCGTGTGCGGTAAGATGGTGCGTCGCGAGGGAGCGAGAGCGCATGCGCGCATTCACACCGCTCGCACCGCCTTTGAGTGCGCCGCCTGCGACAAGCGCTTCGTGTCGCGAGACTCCTTCGAGAAGCATCTCAAGTACTCCAGCAAGCACGCCGTGTCCGACGTGCACAAGTTAGTAGCTACTAACAGCCCTCCGAGCAATGTCCCGTGTGCGGTAAGATGGTGCGTCGCGAGGGAGCGAGAGCGCATGCGCGCATTCACACCGCTCGCACCGCCTTTGAGTGCGCCGCCTGCGACAAGCGCTTCGTGTCGCGAGACTCCTTCGAGAAGCGCTGAGTGCGCCGCCTGCGACAAGCGCTTCGTGTCGCGAGACTCCTTCGAGAAGCATCTCAAGTACTCCAGCAAGCACGCCGTGTCCGACGTGCACAAGTTAGTAGCTACTAACAGCCCTCCGAGCAATGTCCCGTGTGCGGTAAGATGGTGCGTCGCGAGGGAGCGAGAGCGCATGCGCGCATTCACACCGCTCGCACCGCCTTTGAGTGCGCCGCCTGCGACAAGCGCTTCGTGTCGCGAGACTCCTTCGAGAAGCATCTCAAGTACTCCAGCAAGCACGCCGTGTCCGACGTGCACAAGTTAG
- Protein Sequence
- MEDYSKLVLRRICCTCLSVDRNLTQLCKLKDGVNNLFILLSSDPDAYKAMFSRDATHLYICWECEHFMRRQTRFREQVCVAQKQITQIIDGEIDLNPECSLSTLTRVHQNAYTNKIVYNSDFIDNFIDCGPDIDIKKEPELNISLSDNELANTSDEDITTDVIDQINVIDNKLEIKPLLTNKRKLKQDIPNKRAKSKRKVRKENDSIEKIDKTELIDDIKIDKVFESSIRNVKIEMDIENEENRAEENETIKNLNIELKKQKTWKVKNVEEFIKEEGFSRINMTEEELLDSIEKRRSEEDFVLAFYKCKSCVEVFKDQIELEEHNAKLHVQKPKFVQCDICQVYIKFWWLPEHRKEHYHKYQCDHCSRVCYAVLDVLQHLRDEHSVADALTPAILRKVSIVKFLKLCWLPQHRKEHYLKYQCDHCSRVCYAVLDVLQHLRDEHSVVDALTPALHIAARSRYLRYKHILKLHREGHKCATCGKTFAFKNTLNKHQLIHLEPQPSEQCPVCGKMVRREGARAHARIHTARTAFECAACDKRFVSRDSFEKHLKYSSKHAVSDVHKLVATNSPPSNVPCACAACDKRFVSRDSFEKHLKYSSKHAVSDVHKLVATNSPPSNVPCAPSEQCPVCGKMVRREGARAHARIHTARTAFECAACDKRFVSRDSFEKHLKYSSKHAVSDVHKLVATNSPPSNVPCAVRWCVARERERMRAFTPLAPPLSAPPATSASCRETPSRSAECAACDKRFVSRDSFEKHLKYSSKHAVSDVHKLVATNSPPSNVPCAVRWCVARERERMRAFTPLAPPLSAPPATSASCRETPSRSISSTPASTPCPTCTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -