Mmin025871.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- JAXAVZ010000277.1:68880-91378[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0055 0.38 12.0 1.3 1 23 111 133 111 133 0.99 2 20 1.1 74 4.8 0.1 1 23 140 163 140 163 0.92 3 20 2 1.4e+02 3.9 1.3 1 23 167 189 167 189 0.97 4 20 0.002 0.14 13.4 0.9 1 23 194 217 194 217 0.97 5 20 0.00012 0.008 17.3 1.9 3 23 223 244 222 244 0.95 6 20 0.29 20 6.6 0.0 2 21 279 298 279 303 0.91 7 20 9.8 6.8e+02 1.8 1.7 2 23 327 349 326 349 0.89 8 20 3.2 2.2e+02 3.3 2.2 1 11 362 372 362 391 0.94 9 20 3.2 2.2e+02 3.3 2.2 1 11 404 414 404 433 0.94 10 20 3.2 2.2e+02 3.3 2.2 1 11 446 456 446 475 0.94 11 20 3.2 2.2e+02 3.3 2.2 1 11 488 498 488 517 0.94 12 20 3.2 2.2e+02 3.3 2.2 1 11 530 540 530 559 0.94 13 20 3.2 2.2e+02 3.3 2.2 1 11 572 582 572 601 0.94 14 20 3.2 2.2e+02 3.3 2.2 1 11 614 624 614 643 0.94 15 20 3.2 2.2e+02 3.3 2.2 1 11 656 666 656 685 0.94 16 20 0.13 9.2 7.6 0.1 1 13 698 710 698 712 0.86 17 20 7.4e-05 0.0051 17.9 0.4 1 23 714 736 714 736 0.94 18 20 0.02 1.4 10.2 3.4 1 23 742 764 742 764 0.98 19 20 1.3e-07 9.3e-06 26.5 0.6 1 23 771 793 771 793 0.98 20 20 6.1e-05 0.0042 18.2 1.9 1 23 799 822 799 822 0.96
Sequence Information
- Coding Sequence
- ATGAGATGTGATGTAACAGTGGAACGTGTCAAGAGTGAAActggtgatgatgatgtgaGACATTCAGAATCGAATCTACTTGATGATGACAGTGATGTTGCAATTATAGAAAATGATGAGAGCGGAAATTATGGAGATAtggataaaaatgttaaagATACTAAAACCAAAAAGCAACGTAAAAGAaatcctaaaataaataaaggctaCAAGACCTCGGAGGAAGTGCAGGAAATGCTCAAACAGTTTAACTTAACCAAACTAACCATAGAGCAACAGTTAGCAGATATAGAGACGAGGAAAGAGAGCAGTAACTATAACAACTCAGTGTACAAATGTGACAAGTGTTATAAAGGATTCATTGCTGAGAATACGTATGACAGCCATATGAAGACCCATAGTAAAACATATGGCCAGTACCTCTGTGCCGTATGTAAGGTGTACGCCAAGAGTGCCAGCGCGCTCCGGCTGCACGTCAAAGAGAGCCACAGCACCAGATACAGCTGCGTCTCCTGTTCTTTCATCACTAAACAcaaGTCTAGTGCAGTGAACCACGCTAGATGGCATACAGGTGTTAAGTTCAAATGTGAGCTTTGTACTGAGGAATACGATAAGAAGACTTCCCTGCTATCTCACATACGTCTCTATCACCCTTCTGACGTCGCGTGTCCCTTCTGCGGGTACTGCTTCGTGAACCAGCACGGGCTGCGGAAGCATGTAGAAGTGAAGCATCGCTTCGATACTACTGAGGCGAGTAAGAAGCAAacttctaaaaacaaaaaatatacatacatagcatcacgccttattcccatagtgTCGGTGTCGGGCCCGGTGTGTGCGGAGTGTGACATTCGCTTCGCTAACGACACAGCGTATCAGCAACATGTGCTGGTGTCTCCCAAGCATAACACTGGCGGATCTCATCGTAACCGGCCTATCGGAAAACACAAGCGTCTCAGCAACACCAAAATAGTGGAGTGCGAACAGTGTGGACTGCAATGCAAGGGCTACAGACTATACTACAATCACTTCACTAGATTACACCCAGGTGACACTCCCGCGCAGAGCGCGCCGCAGCCATACTTGTGTGAGCAGTGCGGGAAAGCGTTCAAGTGTGGACTGCAATGCAAGGGCTACAGACTATACTACAATCACTTCACTAGATTACACCCAGGTGACACTCCCGCGCAGAGCGCGCCGCAGCCATACTTGTGTGAGCAGTGCGGGAAAGCGTTCAAGTGTGGACTGCAATGCAAGGGCTACAGACTATACTACAATCACTTCACTAGATTACACCCAGGTGACACTCCCGCGCAGAGCGCGCCGCAGCCATACTTGTGTGAGCAGTGCGGGAAAGCGTTCAAGTGTGGACTGCAATGCAAGGGCTACAGACTATACTACAATCACTTCACTAGATTACACCCAGGTGACACTCCCGCGCAGAGCGCGCCGCAGCCATACTTGTGTGAGCAGTGCGGGAAAGCGTTCAAGTGTGGACTGCAATGCAAGGGCTACAGACTATACTACAATCACTTCACTAGATTACACCCAGGTGACACTCCCGCGCAGAGCGCGCCGCAGCCATACTTGTGTGAGCAGTGCGGGAAAGCGTTCAAGTGTGGACTGCAATGCAAGGGCTACAGACTATACTACAATCACTTCACTAGATTACACCCAGGTGACACTCCCGCGCAGAGCGCGCCGCAGCCATACTTGTGTGAGCAGTGCGGGAAAGCGTTCAAGTGTGGACTGCAATGCAAGGGCTACAGACTATACTACAATCACTTCACTAGATTACACCCAGGTGACACTCCCGCGCAGAGCGCGCCGCAGCCATACTTGTGTGAGCAGTGCGGGAAAGCGTTCAAGTGTGGACTGCAATGCAAGGGCTACAGACTATACTACAATCACTTCACTAGATTACACCCAGGTGACACTCCCGCGCAGAGCGCGCCGCAGCCATACTTGTGTGAGCAGTGCGGGAAAGCGTTCAAGTGTGGACTGCAATGCAAGGGCTACAGACTATACTACAATCACTTCACTAGATTACACCCAGGTGACACTCCCGCGCAGAGCGCGCCGCAGCCATACTTGTGTGAGCAGTGCGGGAAAGCGTTCAAGAGCGCGCCGCAGCCATACTTGTGTGAGCAGTGCGGGAAAGCGTTCAAGTCACGCTGGACTCTACGAGACCACGAGCAACTGCACAAAAGCAACACGGTCTTCCAGTGCGACATTTGCAAGAGCAGATACTCCTTACGCTGCAGTCTCATCAACCACTTGAAGAGCCACTCCAAGCCGCAGCCGGTGTTCGAGTGTCCCATATGTGGCAAGAAGTTTAATAACAAGGCCAACACTAACAGACATATCATGACCCACAATGATCTGAGGCCGTTTAAATGCGGAGAATGCGGCAAATCCTTCATCACCGCTTCAGAGCAACGAGCTCATCACCAGCATGCGCACCTGAAGAAGCCTTGGCCCAAGAAGGGCTGCGTCAGAGCGCGCGCCAGCCGCCGCCGGGACGCCAAGGAGCCTGCCACTGGCGCCCTGCTCAAGGTATGctcactcatcatcatcatcagctcaaGAAGGGCTGCGTCAGAGCACGCACTAGCCGCCGCCGGGACACCAAGGAGCCTGCCACTGGCGCCCTGCTCAAGGTATGctcactcatcatcatcatcagcatcatcatcatcatcatcagctcaaGAAGGGCTGCGTCAGAGCGCGCACTAG
- Protein Sequence
- MRCDVTVERVKSETGDDDVRHSESNLLDDDSDVAIIENDESGNYGDMDKNVKDTKTKKQRKRNPKINKGYKTSEEVQEMLKQFNLTKLTIEQQLADIETRKESSNYNNSVYKCDKCYKGFIAENTYDSHMKTHSKTYGQYLCAVCKVYAKSASALRLHVKESHSTRYSCVSCSFITKHKSSAVNHARWHTGVKFKCELCTEEYDKKTSLLSHIRLYHPSDVACPFCGYCFVNQHGLRKHVEVKHRFDTTEASKKQTSKNKKYTYIASRLIPIVSVSGPVCAECDIRFANDTAYQQHVLVSPKHNTGGSHRNRPIGKHKRLSNTKIVECEQCGLQCKGYRLYYNHFTRLHPGDTPAQSAPQPYLCEQCGKAFKCGLQCKGYRLYYNHFTRLHPGDTPAQSAPQPYLCEQCGKAFKCGLQCKGYRLYYNHFTRLHPGDTPAQSAPQPYLCEQCGKAFKCGLQCKGYRLYYNHFTRLHPGDTPAQSAPQPYLCEQCGKAFKCGLQCKGYRLYYNHFTRLHPGDTPAQSAPQPYLCEQCGKAFKCGLQCKGYRLYYNHFTRLHPGDTPAQSAPQPYLCEQCGKAFKCGLQCKGYRLYYNHFTRLHPGDTPAQSAPQPYLCEQCGKAFKCGLQCKGYRLYYNHFTRLHPGDTPAQSAPQPYLCEQCGKAFKCGLQCKGYRLYYNHFTRLHPGDTPAQSAPQPYLCEQCGKAFKSAPQPYLCEQCGKAFKSRWTLRDHEQLHKSNTVFQCDICKSRYSLRCSLINHLKSHSKPQPVFECPICGKKFNNKANTNRHIMTHNDLRPFKCGECGKSFITASEQRAHHQHAHLKKPWPKKGCVRARASRRRDAKEPATGALLKVCSLIIIISSRRAASEHALAAAGTPRSLPLAPCSRYAHSSSSSASSSSSSAQEGLRQSAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -