Mmin024768.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- JAXAVZ010000166.1:1207032-1252256[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 6.4 4.4e+02 2.4 1.1 2 23 338 360 337 360 0.89 2 25 0.16 11 7.4 0.2 1 17 364 380 364 381 0.92 3 25 6 4.1e+02 2.4 1.0 2 23 381 403 380 403 0.89 4 25 6.4 4.4e+02 2.4 1.1 2 23 430 452 429 452 0.89 5 25 3.4 2.3e+02 3.2 0.2 1 14 456 469 456 470 0.87 6 25 6.4 4.4e+02 2.4 1.1 2 23 477 499 476 499 0.89 7 25 0.16 11 7.4 0.2 1 17 503 519 503 520 0.92 8 25 6 4.1e+02 2.4 1.0 2 23 520 542 519 542 0.89 9 25 0.16 11 7.4 0.2 1 17 546 562 546 563 0.92 10 25 6 4.1e+02 2.4 1.0 2 23 563 585 562 585 0.89 11 25 9.5 6.6e+02 1.8 0.1 1 11 589 599 589 603 0.89 12 25 6.4 4.4e+02 2.4 1.1 2 23 611 633 610 633 0.89 13 25 2.6 1.8e+02 3.6 0.8 1 19 637 655 637 660 0.87 14 25 3.4e-05 0.0024 19.0 0.9 2 23 664 686 663 686 0.96 15 25 3.9 2.7e+02 3.0 6.9 2 23 690 712 689 712 0.94 16 25 0.017 1.2 10.4 0.5 2 22 726 746 725 750 0.93 17 25 0.0013 0.087 14.0 0.2 2 23 764 786 763 786 0.95 18 25 0.0097 0.67 11.2 1.6 2 21 800 819 799 824 0.93 19 25 0.00034 0.023 15.8 1.2 2 23 839 861 839 861 0.95 20 25 0.045 3.1 9.1 0.1 3 21 878 896 877 901 0.93 21 25 0.045 3.1 9.1 0.1 3 21 914 932 913 937 0.93 22 25 1.7e-05 0.0012 19.9 0.2 2 23 946 968 945 968 0.94 23 25 0.28 19 6.7 3.5 1 23 974 997 974 997 0.92 24 25 0.00084 0.058 14.6 1.3 3 23 1008 1028 1007 1028 0.98 25 25 0.028 1.9 9.8 1.7 1 23 1034 1057 1034 1057 0.97
Sequence Information
- Coding Sequence
- atgcgaagaaatggtcaaacctacagagtgaCATCTAGAGATCTTCGTCGACCAATTAAAACGATCCATCGCAGTATCCAACGGTTCAGGGAGACCGGtacttatgtgagaagagcaggacaaggcAGAACAAGACGCACTTCGAGTAGGGATGATCGTTTCATTCGGCTTCGTGTACGTAGGAACCCTCGTTTGACGGCCGTCCAAGCCCGACATAAGTTAGAAGCAGTGCGGGGTGTAACCGTAAGTGAGCGTACGGTACGAAGAAGGTTCGAAGAAGCTGGTTTGGGTTCATTTGTGCCCGCCAAAGCTCTAAGGCTCGAGGATTCCAAGTACTACAACATCCTTCTCTGCTGGGAATGCATTGCATTGCTGAAGAAAGCCGAGGTGTTCCGCAAGAGGGTGCAGACTGCTCACAGATACTTCGAGAGGATACTGAGTAACCCATCAACAACGCGCGCTTTGACAACTCTAAAAACCCACAAGAAAGACGACTACGATCTAATATATGTGGAAAATGAAAATGCTGAACCCGTAATCAAGCCTGAGGCGTTGAAGTTTGAGGTTTCCCTGCTTGAGATAGATCCGGAGAACTGTCATATCAAGGAGGAGGCTGACTATGACGATGATGACAACTTCGATTATGACGTCGAGGAGCCCAAGCCAGATGTGTCTGATTTTGTCAAAAaggagaaaaagaagaagaaatataaGAATTCTACTTCAAATTCTAAATTCAGTCCTCTGGgcAAAAGAGTAAAAACCAAATCGGTAAAATATACGCCTGAGGAAATAAACCGTTGCATAGAGGAAGTGGAATACACCGTAAAAGATATCCAAGCTATGAGGCACGAGAAGAAACCCAACCGCATCAAGAACATGGAGACCAGATGCAATGTGTACATCATGAAGCTGTTCGACACGCAGAAGAAGGATCTTAATAAACGTTTGAAGGTGAGACATTATACACTGTCTGCGGCCCACTGGGACAGCCACCCGGTGTCGCTGCTGCGCTGCCAGTTCTGCGGGCTGCTGAGCAAGTCGCGCAAGAGCATGACCTACCACACTGAGGCGCGCCACTCCATCATATACAGCTGTACGCTGTGCCACATTGACTTCAGCCACCCGGTGTCGCTGCTGCGCTGCCAGTTCTGCGGGCTGCTGAGCAAGTCGCGCAAGAGCATGACCTACCACACTGAGGCGCGCCACTCCATCATATACAGCTGTACGGTGAGACATTATACACTGTCTGCGGCCCACTGGGACAGCCACCCGGTGTCGCTGCTGCGCTGCCAGTTCTGCGGGCTGCTGAGCAAGTCGCGCAAGAGCATGACCTACCACACTGAGGCGCGCCACTCCATCATATACAGCTGTACGCTGTGCCACATTGACTTCAGTGGGTGGGACAGCCACCCGGTGTCGCTGCTGCGCTGCCAGTTCTGCGGGCTGCTGAGCAAGTCGCGCAAGAGCATGACCTACCACACTGAGGCGCGCCACTCCATCATATACAGCTGTACGCTGTGCCACATTGACTTCAGCCACCCGGTGTCGCTGCTGCGCTGCCAGTTCTGCGGGCTGCTGAGCAAGTCGCGCAAGAGCATGACCTACCACACTGAGGCGCGCCACTCCATCATATACAGCTGTACGCTGTGCCACATTGACTTCAGCCACCCGGTGTCGCTGCTGCGCTGCCAGTTCTGCGGGCTGCTGAGCAAGTCGCGCAAGAGCATGACCTACCACACTGAGGCGCGCCACTCCATCATATACAGCTGTACGCTGTGCCACATTGACTTCAGGGCCCACTGGGACAACCACCCGGTGTCGCTGCTGCGCTGCCAGTTCTGCGGGCTGCTGAGCAAGTCGCGCAAGAGCATGACCTACCACACTGAGGCGCGCCACTCCATCATATACAGCTGTACGCTGTGCCACATTGACTTCAGAGCGCTCCCGGAGTACTACCGCCACGACCGGGAGCTACACAAGTCGCTGATATGCGACTACTGTGGGAAGAAGTTCCAGCAGAAGTCGGGCATCGAGCGGCATATCAAGCGTAAACACTTACCATTAAAATGCTGCGTCTGTCACCGCCAATACAAGAAGATGGTCTTCCTCAACAACCACATGGTCGTGTGCCACCCCGACGTGCCGTGGAGGAAGGTCAAACGCGAGCTCACTTACTGCGTAGAGTGCGACATGCACTTCGGTACCGAGTTCCTCTACAAACGCCATCTTAGGACCGCCATAGCTCACCGTCCTAAACCGAAGATATCACGATACCACTTACCAATACAGTGCGAGATTTGTAAAAACGTATACAAGAGGGAGAGCACCCTGGATAATCACATGGCCGTACGTCATCCTGAGGTCAAATGGAAAACGGTCAAGCGCGAGTTGACCTATTGCGTGGAATGTGACATACATTTCGCCACGGAGGATCTGTTCAAACGTCACTTGAGACACTACGTTAGGCATCGAGTCAAACCGCGTAAAGAGCAaCACAACCACTTACCCGCCGTGTGCCTAATATGTAACTTTGAGTTCAAAAGAAAGAACTACCTCAAAGAGCATATGAAGCTAATGCACCCCGAGATCGTAGAAGTAAAGAGGGAAATAGTCAAAGAGCTGGCGTACTGCGTTGAGTGCGACCTGCAGTTCGCCAGCGAGTACTTTTACAGGCGGCACCTGAGATACGCGGTCGCGCACAAGCGCAGAagGGAAATAGTCAAAGAGCTGGCGTACTGCGTAGAGTGCGACCTGCAGTTCGCCAGCGAGTACTTTTACAGGCGGCACCTGAGATACGCGGTCGCGCACAAGCGCAAAGTAAGGCCTAAGGTCCCATGTCCCGATTGTGGTAAGATATTTAGCAGGAAGAGCTACATGGATAACCATTATAAGCTGATACACGTTAGAAAGAGTCAGCATTACTGTGAACTTTGTGATAAGCATTTCATCAACGGCTACGCTATAAGGACACACAAGAAGTTCGTCCACGAGAAGTATGAAAAGCCGAAGAACAAGATATGCGACATCTGTGGCCGAGGATTCCATACAAACCGCGTGCTAATAAACCACAAGCGCACGCACACCGGCGAGCGGCCGCACAAGTGCTCGTACTGCTCGGCGGCGTTCGCACAGAACGTAGCGCGCAAGACGCACGAGAAGACGCAGCACAAGCACCTGCTGCAGGAGCTGAAGGGGTTCTCCGCTTGA
- Protein Sequence
- MRRNGQTYRVTSRDLRRPIKTIHRSIQRFRETGTYVRRAGQGRTRRTSSRDDRFIRLRVRRNPRLTAVQARHKLEAVRGVTVSERTVRRRFEEAGLGSFVPAKALRLEDSKYYNILLCWECIALLKKAEVFRKRVQTAHRYFERILSNPSTTRALTTLKTHKKDDYDLIYVENENAEPVIKPEALKFEVSLLEIDPENCHIKEEADYDDDDNFDYDVEEPKPDVSDFVKKEKKKKKYKNSTSNSKFSPLGKRVKTKSVKYTPEEINRCIEEVEYTVKDIQAMRHEKKPNRIKNMETRCNVYIMKLFDTQKKDLNKRLKVRHYTLSAAHWDSHPVSLLRCQFCGLLSKSRKSMTYHTEARHSIIYSCTLCHIDFSHPVSLLRCQFCGLLSKSRKSMTYHTEARHSIIYSCTVRHYTLSAAHWDSHPVSLLRCQFCGLLSKSRKSMTYHTEARHSIIYSCTLCHIDFSGWDSHPVSLLRCQFCGLLSKSRKSMTYHTEARHSIIYSCTLCHIDFSHPVSLLRCQFCGLLSKSRKSMTYHTEARHSIIYSCTLCHIDFSHPVSLLRCQFCGLLSKSRKSMTYHTEARHSIIYSCTLCHIDFRAHWDNHPVSLLRCQFCGLLSKSRKSMTYHTEARHSIIYSCTLCHIDFRALPEYYRHDRELHKSLICDYCGKKFQQKSGIERHIKRKHLPLKCCVCHRQYKKMVFLNNHMVVCHPDVPWRKVKRELTYCVECDMHFGTEFLYKRHLRTAIAHRPKPKISRYHLPIQCEICKNVYKRESTLDNHMAVRHPEVKWKTVKRELTYCVECDIHFATEDLFKRHLRHYVRHRVKPRKEQHNHLPAVCLICNFEFKRKNYLKEHMKLMHPEIVEVKREIVKELAYCVECDLQFASEYFYRRHLRYAVAHKRRREIVKELAYCVECDLQFASEYFYRRHLRYAVAHKRKVRPKVPCPDCGKIFSRKSYMDNHYKLIHVRKSQHYCELCDKHFINGYAIRTHKKFVHEKYEKPKNKICDICGRGFHTNRVLINHKRTHTGERPHKCSYCSAAFAQNVARKTHEKTQHKHLLQELKGFSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -