Mmin022658.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- CM067907.1:1053006-1064559[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.11 7.3 8.0 2.0 1 23 404 426 404 426 0.98 2 11 0.029 2 9.7 0.0 1 23 433 455 433 455 0.95 3 11 0.1 6.9 8.0 0.5 3 23 489 510 488 510 0.97 4 11 5.3e-05 0.0037 18.4 0.1 1 23 519 541 519 541 0.97 5 11 2.5e-05 0.0017 19.4 1.1 1 23 546 568 546 569 0.95 6 11 0.00094 0.065 14.4 0.5 1 21 575 595 575 600 0.94 7 11 0.00082 0.056 14.6 1.5 1 21 605 625 605 628 0.95 8 11 0.0025 0.17 13.1 0.1 1 23 634 656 634 656 0.94 9 11 5.8 4e+02 2.5 1.2 2 14 666 678 665 690 0.85 10 11 0.0025 0.17 13.1 0.1 1 23 699 721 699 721 0.94 11 11 5.6e-05 0.0039 18.3 1.1 2 21 731 750 730 751 0.95
Sequence Information
- Coding Sequence
- ATGACTTTTCTTTGCTTTATATGCAACGATGCAGTTAATACCGATACAGATGACAAAACCAGAGATAAATATAGAGATGTTATTGGTATAagtTTACCCCTAGACTGTCAGTTATGCTATGTATGCTGTCATGTTGTACATAAGTTATGGATCTTCAAATCTGTATGTATGGAGAAGAGCTTGGAACATCCTACTCTGCACAGTAAAAAACGCTCAATAAAATTACAGAAAAGTGACTTAGAAATCCACATCCTGTGTCCAGAAAAATGTTACgaatacaaacaaatacacaGCAACAAAAGTCATCAATACAATGATGCCGATGACTACATAAATCCACAATACATTAATGATGTTGTATACATACAAAACGACAATCAATACATTGACGATGTACATGATTTTGATTATATTGACAAAGATCATCAAtacaataatgataatataaaatgCAATGAACATAATCATACAAAACACAATACAATAGTACAGTTCAACTATGCCaatgattttgaatatattgacaaaaatgatcaatacaaaaatgataatttattagaCAATGAACATCATAATGTTAAACATACAATAGAACAGTTCAACTATGAtgcaaataattttgattttgacaaagataatgaatatattaatgatattacTAAATTACAATGCAATACAATTAATCAAAATTCAATTGAACATAATTACAATGTATTACAGTTAAATACTaatcaagatttaaaaaatgacCAATCAATCAATAATGATTTAAGTGATAATATTGAATCAAATAATCATGTAGAATTACCAGGTGTAATAGATGATAACAGAATATATgacagtaaaattaataatacagaCATCTTAGAATCAGATACAGTTAATATAAATTCAGAATTAGACCATAATAATGAGAATTTAGACAATTCTGTCCAAGTAGATTATGGAAGTGACATAAAAAAGACAGGGAATATAAGTGACAATGAAGTAGATAATTCTGTACAAGTAGATTATGAAGGTGACACAAAAAAGATAGAGAATTATGAAGTAGATTATAACAATGACACAAAAAAGGCAGAGAATAATAGTGACAGCGAAAAGAAGATTAAAAAGAAGAGTAAAGTTTTTAAAAGGATTATATTGAGTTTGGAGAAGCAGAAGGCGGAGTTAGAAGCTaatagaaagaagaagaagtatgTGGAAGCTGAATTCAAGTGTTATAATTGTGCTTTGAGCTTTTTATTTAAGGATACTTATCAAGTGCATATGATGAGGCATGAAGAGTCCAACGGCGAGTACGTCTGCGCAGCCTGCACCCTCCGCTTCGCAAGCCCGGCGCTCCTGCGCACCCACACAGCGGGCCACGCGGAGCGCCACGCGTGCAAGCGCTGCGGGGAGGTGCTCCGCCCCCGTGCACGGCGTCTACATCCCTGCGCGAGAGGGGATCCGCCCCAGCGGGTCGCTTGCCATCTGTGTGGGAATCTGCTCAAAGACGCGAACGGTCTTCAGCAGCATTTGAAGCGCGTGCACGCGAACAAAGCCAGCGCGCGACGCTATGCTTGCAGCGTGTGCGGGGACAGCTACACCAGGCAGGGCGCGCTCAGGACACACATGATCAAACACATAAACCGCAAGTTCCCCTGCGACCAGTGCCCGCGATCCTACAGCAGCCCATACACGCTGGAGCAGCACAAGCGCGCCCACCACACCGCGCCGGTCACGCACCGCTGCGACACGTGCGGCGCGGGCTACGCCTCCAGGAAGAGTCTGTTGGCCCACATGAGGAACACCAGCAACCATTCTACCACTACATACGAGTGCCCCATATGCAGTCGCGTGTGCCCGAACCAAAAGTCGCTCGCATCTCACATACAGTGCGTGCACTCGAGTCGCAAGGACTACGCGTGCTCGCTGTGCCCCGCGCGCTACACCAACAGGAAGTCGCTCGTGCGACACGCGCTCGCGCACACCGAGCGCAAGCCGGCGAGGATAGTCGTGTGTCACTTGTGCGGGAATCATTTCAaggtaaacaaacaaacaaaccagAAGTCGCTCGCATCTCACATACAGTGCGTGCACTCGAGTCGCAAGGACTACGCTTGCTCGCTGTGCCCCGCGCGCTACACCAACAGGAAGTCGCTCGTGCGACACGCGCTCGCGCACACCGAGCGCAAGCCGGCGAGGATAGTCGTGTGTCACTTGTGCGGGAATCATTTCAAGGACAACAGTAAATTAAACAGACACATTCGAGAAGTATGCAAGAAGGCAAAAGAAGAACAAATTGCTGTTTACAGTTAG
- Protein Sequence
- MTFLCFICNDAVNTDTDDKTRDKYRDVIGISLPLDCQLCYVCCHVVHKLWIFKSVCMEKSLEHPTLHSKKRSIKLQKSDLEIHILCPEKCYEYKQIHSNKSHQYNDADDYINPQYINDVVYIQNDNQYIDDVHDFDYIDKDHQYNNDNIKCNEHNHTKHNTIVQFNYANDFEYIDKNDQYKNDNLLDNEHHNVKHTIEQFNYDANNFDFDKDNEYINDITKLQCNTINQNSIEHNYNVLQLNTNQDLKNDQSINNDLSDNIESNNHVELPGVIDDNRIYDSKINNTDILESDTVNINSELDHNNENLDNSVQVDYGSDIKKTGNISDNEVDNSVQVDYEGDTKKIENYEVDYNNDTKKAENNSDSEKKIKKKSKVFKRIILSLEKQKAELEANRKKKKYVEAEFKCYNCALSFLFKDTYQVHMMRHEESNGEYVCAACTLRFASPALLRTHTAGHAERHACKRCGEVLRPRARRLHPCARGDPPQRVACHLCGNLLKDANGLQQHLKRVHANKASARRYACSVCGDSYTRQGALRTHMIKHINRKFPCDQCPRSYSSPYTLEQHKRAHHTAPVTHRCDTCGAGYASRKSLLAHMRNTSNHSTTTYECPICSRVCPNQKSLASHIQCVHSSRKDYACSLCPARYTNRKSLVRHALAHTERKPARIVVCHLCGNHFKVNKQTNQKSLASHIQCVHSSRKDYACSLCPARYTNRKSLVRHALAHTERKPARIVVCHLCGNHFKDNSKLNRHIREVCKKAKEEQIAVYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -