Mmin024759.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- JAXAVZ010000166.1:1039136-1058131[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.65 45 5.5 2.4 1 23 210 233 210 233 0.93 2 11 0.0045 0.31 12.3 1.0 1 23 240 262 240 262 0.98 3 11 9.3 6.4e+02 1.8 0.7 1 23 266 289 266 289 0.84 4 11 0.097 6.7 8.1 3.6 1 23 296 318 296 318 0.98 5 11 0.001 0.069 14.3 0.0 2 23 324 346 323 346 0.94 6 11 0.0012 0.083 14.1 0.1 1 23 353 376 353 376 0.96 7 11 0.0044 0.3 12.3 1.2 3 21 385 403 384 408 0.93 8 11 3.3e-05 0.0023 19.0 0.6 1 23 416 439 416 439 0.92 9 11 8.3e-05 0.0057 17.7 4.6 1 23 445 468 445 468 0.93 10 11 1e-06 7.2e-05 23.7 0.4 3 23 479 499 478 499 0.98 11 11 0.0088 0.61 11.4 2.1 2 23 506 528 505 528 0.92
Sequence Information
- Coding Sequence
- atgtTCCAACCCAATAATGTCATTTGTTATTGGTGCCATAACATACTgaagaaaataaatgatttcaaGCTGCAAGCGTTGGACAGCTACAACATACTCAACAGTGGGTTAAGAGACTCTGCAAACAACTACCTCCAAAATCTAGAATATTCAAAAATAGAACTACAGTCGACCATAAACTCAAAACCAATAGAATTCCAGACCACAgaacacacaataaaaaaagaaaccacCGAATTTGGGCACACAATTGAAATAAAGATTGAGCCACACAATTTTTCGGAATACGACAATATGCCGATTGCTAAAatcggtaaaaaaattaaaacagataaaaatattagCAATGATATAATAAATTCTCAGAGTAATACAACAACAGAAACAAAGCTTAAAAAACAAATCACAACACAGAGTAAAACAGGTAAGTCACCACAGACTAAACATAGAAAACAAACAcagattaaaaagaaaactgagAAATCATTGAAGCCACAGATTAAAAAGCCCAGAGAGGTGAATGGGATGTGCTATGATGATAAAGTGGCTATCATCATTTTGTCTGAACAAGAAATGATAGATGAACGGAAAGTTGATGCAGAGAATAGCAAATATTTGAAACTGCCGTACAAATGTGAGAAGTGCATAACATCCTTCAACCATGAGTTGATGTTAAATGAACATAATGAGAAGAAACATAAAAAGgtgGAAGGTGGCTTTGTCTGCGATATATGTGAATCGGTTTTCAACAAAAAGTTGTCATTTGAAGAACATTACAAACGACATTATAGGCGATATGAATGCATAGAGTGCAAGCAAAGGTTCAACAATATATTCCCAGCGTTGAAACACTATAAAGAAACCCATGGCAAtgttgatatgaatttcaaatgtaaactatGCGAGTTCACTACCGAGTCGTACCGCAGTCTGAGGTATCACAGAGACAAACATCTCAAAGACAAGGTAGAGTGCGAGCAGTGTGGCAACACCTTTGTGGACGCCAACGGACTACGGGTGCACTTGTTAAACGTCCACAAGCTCTCGAACCGCGTGTACTCGTGCGACCCATGCGGCAAAGTGTACAACAACATCCAGAGCCTGAACGCACACGTCAGACTGACGCATAAACAAACCGCCAGCGCCCCCTACTGCGTGACGTGCGACCTCAGCTTCCGCACCGAGGCCGGCCTCAAGCACCACCTGAAGCACACCGCCGCACACGTCTCCGAACACGATAACAAGTTTTCATGCACTGAATGCGATATGAAGTTCCGTACGAAGCGTCAACTGCAAGAGCACGTAGACTGGGTGCATCGGAACTGCACCGCGCACACGTGCAGCAAGTGTTCCAAgACCTTCAAGAATGAAAAGAACATGAAACGCCACATATTGTTTGTACACGACAAGTTCAGACCGCCGAGGAACAAAATATGCGACTATTGTGGCAGGGGCTTTACTTCCAGTCAAACGCTCATCACCCACATCCGCACTCACACTGGGGAGCGTCCGCTACAGTGTACACATTGTTCCGCCACCTTCGCGCACAGCGCCGCGCTGTACACGCACAACAAGCTGCTGCACAAGCGGTAG
- Protein Sequence
- MFQPNNVICYWCHNILKKINDFKLQALDSYNILNSGLRDSANNYLQNLEYSKIELQSTINSKPIEFQTTEHTIKKETTEFGHTIEIKIEPHNFSEYDNMPIAKIGKKIKTDKNISNDIINSQSNTTTETKLKKQITTQSKTGKSPQTKHRKQTQIKKKTEKSLKPQIKKPREVNGMCYDDKVAIIILSEQEMIDERKVDAENSKYLKLPYKCEKCITSFNHELMLNEHNEKKHKKVEGGFVCDICESVFNKKLSFEEHYKRHYRRYECIECKQRFNNIFPALKHYKETHGNVDMNFKCKLCEFTTESYRSLRYHRDKHLKDKVECEQCGNTFVDANGLRVHLLNVHKLSNRVYSCDPCGKVYNNIQSLNAHVRLTHKQTASAPYCVTCDLSFRTEAGLKHHLKHTAAHVSEHDNKFSCTECDMKFRTKRQLQEHVDWVHRNCTAHTCSKCSKTFKNEKNMKRHILFVHDKFRPPRNKICDYCGRGFTSSQTLITHIRTHTGERPLQCTHCSATFAHSAALYTHNKLLHKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -