Mmin023990.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- JAXAVZ010000012.1:834761-841712[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.35 24 6.3 0.2 2 23 111 132 110 132 0.94 2 17 0.076 5.3 8.4 2.2 2 23 155 176 154 176 0.97 3 17 0.028 1.9 9.8 0.2 1 23 180 202 180 202 0.97 4 17 0.12 8.5 7.8 2.9 1 23 207 230 207 230 0.89 5 17 0.00042 0.029 15.5 2.2 1 23 236 259 236 259 0.98 6 17 0.00067 0.046 14.9 1.7 2 23 267 289 266 289 0.96 7 17 0.0016 0.11 13.7 3.5 1 23 295 317 295 317 0.98 8 17 0.0044 0.31 12.3 1.4 3 23 361 382 359 382 0.95 9 17 0.14 9.9 7.6 0.2 2 23 408 429 407 429 0.96 10 17 0.0023 0.16 13.2 1.4 1 23 451 473 451 473 0.98 11 17 0.012 0.83 10.9 0.1 2 23 478 499 478 499 0.96 12 17 0.18 13 7.2 0.7 1 21 504 524 504 527 0.83 13 17 0.0052 0.36 12.1 4.4 2 23 535 557 534 557 0.96 14 17 0.00064 0.044 14.9 0.4 2 23 565 587 564 587 0.97 15 17 0.02 1.4 10.2 2.5 1 23 593 615 593 615 0.98 16 17 3e-06 0.00021 22.3 1.1 1 23 621 643 621 643 0.99 17 17 9.1e-05 0.0063 17.6 3.9 1 23 649 672 649 672 0.98
Sequence Information
- Coding Sequence
- ATGTATCCTTTCTTTATAGGCCCAGGCGATGGCCAGGGGGAtgagaaatttaaaaaacccacAAAAGCCGGATCAAACTCGTACAAAAGCAACCAGGACGGAAGAAACAAACACCAAGACAACATTACATCGATCCTCAAATACACAAACGCAACGCCGATACGTTGCGAGAAAGATTCGAGGTACGCCTGTTGCTTCTGCGCAGACTTGTACAGAGAACCGGCAGAGCTTAAAAAgcacaatataaaaaaacaccaaACTGACATACACTCTATAATGACGGGCAAAAGATTGCAGGATTATTTAGTGAAACTGGATATAACAGGGCTGAAATGCAATTTGTGCACGTACAATGTGGATAGTTTAGAAGAAATGATGAAACACTTGGAAGATCACGACAAGCCTATCCACATGGACATAAACAACCACATTGTGCCCTTTATTTTCGAAGACGACGACTTGAAGTGCGCGATTTGTAAAATAGGCTTCAACACTTTCAGAAAAGTGTTCTTGCATATGCACACCCATTACAGAAACCATGTCTGCGACATTTGTGCCGCCGGTTTCATAAACGAGAAATCGTTCCTCGTTCATTACAAAATACACAAGAAAGGGGTCTTCTACTGCAGATTCTGCCACAAAGAGTTTGAAACTTTaagcaggatgaaatcccacGAATCCGGTGTCCATACCAACTCCCTAAGATTCAAATGCAGTTATTGCGGCGACAGATTTACGAATTCTAGCAAGAAGATGAAGCACATCTCAACTGTCCACAATGTTCGTCAAAGGGAGATTAAATGCAAGCTCTGCGATCGAGTTTGTTCCACCATGGAGGCATTAAGAGTTCACACTAAAAGAGATCATCTCATGGAGAGAAGATACGAATGCCATTATTGCAAGAATAAGTACTATCGGATGAACGAATTGAGAAACCACATAGCTACTCATACTGATCCTGagaaaaaaactataaacgACAAGAAGATCGAAAGAAGCAAACACATTGACAACATAAGCACTCTATTCTATAATACAAACGCTACCCCAATACGATCGCAGAAAGATATCGGCTACGGATGCTGCTTCTGCGAAAAATTCTTCATAAAACCAGCAGAATTGAAACAGCACACTAGAGAAATTCACCCAAACGAAATCCTTAATATTATGAACAATAAGTCTTTAAATGACTATTACGCTAAACTAGATATAACAGGTTTGAAATGCAAAGAATGCGAAACCAAGATAGGCGATCTAGACGCCATGATGAGGCACCTGAAAGACCATAACAAAGACATACATTTGGACATAAATAACCAGATAATGCCCTTTAATTTCGAAAACGACGAATTTCGCTGCGTTATATGCAAAGCGGagtttataaaattcaaaaagctAACTGAACACATGAACAAACATTACAGGAATAGAGTTTGCGATGTTTGCGGAGCAGGTTTCATCAACGAGAGATCCTTTCAATTACACTTCCAAGTTCACAAAAAGGGCGTCTTCGCTTGTAAATTTTGCCAAAAAGTTTTCGATACGATAGGCAAGAAGAAATCTCACGAATCAGCTGTTCACATTCACTCGCAGATGTTGAGTAAATGCGGGTATTGCTACAAAAGGTTTAAGACGCATAGGAACAAAGAGAAGCACATTTCTAGCGTGCATGGCGTCAGTTTGAAAGAGATTAAATGTAAGCTTTGTGGCAAATTGTATCAAACAGCGAACGCTTTACGAGTCCACACAAGACGGGATCATTTGAAGGAAAGGCCGTTTGAATGCCAACTATGCGACTATACAGCATATGGCAGCAGATGCTTAAAGAATCATATGCTGAAACATACAGGGGTTAGGGAGTTCCAGTGCGACGTGTGTCTAAAGTCGTATGCGAGAAAGAAGACTTTAAGAGAACATATGCGGATCCATGAAGACGACAGGCGCTTCAAATGCGAGCACTGTGGTATGGCGTTTATACAGAACTGCAGTTTGAAGGGGCATTTGCGGTCCAAACACAGGGATTTGATGCCTTCggtgtaa
- Protein Sequence
- MYPFFIGPGDGQGDEKFKKPTKAGSNSYKSNQDGRNKHQDNITSILKYTNATPIRCEKDSRYACCFCADLYREPAELKKHNIKKHQTDIHSIMTGKRLQDYLVKLDITGLKCNLCTYNVDSLEEMMKHLEDHDKPIHMDINNHIVPFIFEDDDLKCAICKIGFNTFRKVFLHMHTHYRNHVCDICAAGFINEKSFLVHYKIHKKGVFYCRFCHKEFETLSRMKSHESGVHTNSLRFKCSYCGDRFTNSSKKMKHISTVHNVRQREIKCKLCDRVCSTMEALRVHTKRDHLMERRYECHYCKNKYYRMNELRNHIATHTDPEKKTINDKKIERSKHIDNISTLFYNTNATPIRSQKDIGYGCCFCEKFFIKPAELKQHTREIHPNEILNIMNNKSLNDYYAKLDITGLKCKECETKIGDLDAMMRHLKDHNKDIHLDINNQIMPFNFENDEFRCVICKAEFIKFKKLTEHMNKHYRNRVCDVCGAGFINERSFQLHFQVHKKGVFACKFCQKVFDTIGKKKSHESAVHIHSQMLSKCGYCYKRFKTHRNKEKHISSVHGVSLKEIKCKLCGKLYQTANALRVHTRRDHLKERPFECQLCDYTAYGSRCLKNHMLKHTGVREFQCDVCLKSYARKKTLREHMRIHEDDRRFKCEHCGMAFIQNCSLKGHLRSKHRDLMPSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -